PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10010045m | ||||||||
Common Name | CARUB_v10010045mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 29937.6 Da PI: 5.8369 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.4 | 1e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd++lv +++++G +W++ + + g++R +k+c++rw++yl Carubv10010045m 14 RGEWTAEEDQKLVAYINEHGICDWRSLPIRAGLHRYGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56 | 9.2e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+e +++ ++ lG++ W++Ia+ m+ +Rt++++k++w++ Carubv10010045m 67 RGKFTPQEEEDIINFHAVLGNR-WAAIAKLMP-NRTDNDIKNHWNSC 111 89********************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.37 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.39E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.53E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.263 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.56E-10 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGRTTWFDVD GMKRGEWTAE EDQKLVAYIN EHGICDWRSL PIRAGLHRYG KSCRLRWLNY 60 LRPGIKRGKF TPQEEEDIIN FHAVLGNRWA AIAKLMPNRT DNDIKNHWNS CLKKRLSRKG 120 IDPMTHEPII KHLTIKTTDE DCGSSSTTTS PSTGSSPSSA PARLLNKLAA GISSRQHSLD 180 RIKYILSNQM IISSDQVEEE RDQSDMDQKI AGGEEDDAQI WTEEEVRRLM ETDVMEYDVT 240 SYDSIMYEST HMLDHLSFDS V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10010045m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY065166 | 0.0 | AY065166.1 Arabidopsis thaliana Putative MYB47 transcription factor (F6a14.18) mRNA, complete cds. | |||
GenBank | AY114579 | 0.0 | AY114579.1 Arabidopsis thaliana Putative MYB47 transcription factor (At1g18710) mRNA, complete cds. | |||
GenBank | AY519556 | 0.0 | AY519556.1 Arabidopsis thaliana MYB transcription factor (At1g18710) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006304114.1 | 0.0 | transcription factor MYB106 | ||||
TrEMBL | R0GM66 | 0.0 | R0GM66_9BRAS; Uncharacterized protein | ||||
STRING | XP_006304114.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18710.1 | 1e-136 | myb domain protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10010045m |
Entrez Gene | 17900695 |