PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002566m
Common NameCARUB_v10002566mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 277aa    MW: 32166.5 Da    PI: 6.7411
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002566mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.83e-11331131499
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++ ++p k + +  g    +  +++  ++ +sW++ l  ++ ++  ++ ++ W+eFv++n+L  +D++ F++d++++f   v++f++
  Carubv10002566m  33 SMRIIPEKIVGSTPGA--FEHRVVFSVRWENSWQLWL--ERDKDDlFMQEEDWNEFVDDNHLGPNDTLFFRHDDTMDF--EVQIFKN 113
                      4456777777666444..334699999**********..88888868888*********************9999999..9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-1514115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-1515115IPR015300DNA-binding pseudobarrel domain
CDDcd100175.78E-917112No hitNo description
SMARTSM010198.0E-1519114IPR003340B3 DNA binding domain
PROSITE profilePS5086310.5620114IPR003340B3 DNA binding domain
PfamPF023625.5E-932113IPR003340B3 DNA binding domain
SuperFamilySSF1019361.53E-9174264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-7175264IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0012181271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MLPKSVVDKL QENVSKPCFW KSLSPGQNWK SKSMRIIPEK IVGSTPGAFE HRVVFSVRWE  60
NSWQLWLERD KDDLFMQEED WNEFVDDNHL GPNDTLFFRH DDTMDFEVQI FKNNGYEIMD  120
VPLEVELETE PLHHKPQNSH KETVTVSASG SENGGTNGRV RHRRDVMNPM RYLLNPENPH  180
FVKVVTKRND VLYMSRPVIH RYRLKFGPLH STIDFLLPGG QKEEGILRFY NGQPCFSGWS  240
VVCRKYKLNV GDYVVCEIER SGSLVTGVRV HFVNED*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00528DAPTransfer from AT5G25475Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002566m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289143.20.0B3 domain-containing protein At5g25475
SwissprotQ680D91e-150Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLR0FJ180.0R0FJ18_9BRAS; Uncharacterized protein
STRINGXP_006289143.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.31e-144B3 family protein