PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre03.g146267.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 869aa    MW: 88161 Da    PI: 8.0843
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre03.g146267.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185e-06259278626
                         -SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                         C+++ + G+C +Gd C+++Hg
  Cre03.g146267.t1.1 259 CPDYKQ-GFCIRGDVCPYSHG 278
                         ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.12E-697142IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.4E-798144IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.95100132IPR002110Ankyrin repeat
PROSITE profilePS5029710.816100141IPR020683Ankyrin repeat-containing domain
CDDcd002044.89E-4102141No hitNo description
SMARTSM003560.0024253279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.929253280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4285317IPR000571Zinc finger, CCCH-type
SMARTSM003564.4288311IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.7288312IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MARPSEDSEV IGHYLVPANG RPAQPLLHES SSLFVNVVSD KLSAVESVVE ADTSKLQTFY  60
LILHWASSPD GQGVTGSTQE ACAGSLDAAA AAGRASVTVK QRTLLMVAAH SGSLRVLAYL  120
LARGAEPSRK SPDGMTAYDM ALAGETPQAP TAIAMMRDAD SHPSSSTRSS STTDANSFNG  180
TEGARMGNGR QDESEGSIYN TSDLTRPEYS TDEFRMFNFK VLRCSKRHAH DWRACPFAHP  240
TENARRRDPR EFKYCALACP DYKQGFCIRG DVCPYSHGVF ECWLHPSRYR TQLCKDGSNC  300
HRPVCFFAHS LPELRAPTYT WVPSSADLAA RPYSATSPTN SGPGGVNSGA GGGVGGGTLP  360
PAAAAMAAMA LGAVSPDAAA SMHQQHQQHQ LQKQQSGQGM ESSAVAAEAR ALLSHTLSGI  420
PVAASNTSEG AMSGPGNISP RGQQQVMMLM SGGGANGSSA SSSAMVLGTH GGGTTTTGSS  480
SSSSGANGAQ SPSSGGSMAE GCNGTSGALA AAAAAVAERN GKDGGKGGHS GGNNNNGNQA  540
SGGKPTNLTQ PNAAASMLGF TAPRMSNAFA RRHGLNPKDN PMINLQKIAL QTQQQQQVQQ  600
QQAQVQAVAV AAAAAAAQQQ QVVQQQAQVQ AQVAAQMQGQ MAAGLPVGVG GAGILAAGVG  660
GRAATTAGQR LNAAAAAAAA AAAAAAATGQ VGLGGMPFAA QQAAAAGAAY GMNSLYSPMQ  720
VSQMQAAAVA GLNSAPGADA SLLAAQLAAL NLQQQQHVQQ PHVQHARQML QQQHQQAQMH  780
TQSGPAGLSQ PGAQLGGLGA ISAIGGMGMA AAAAAAAAAG MGHGSVQYLS SGAPHPSLIH  840
HQGMVYGGSP HAVHMYDQQQ YLGAQTEV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347357SGAGGGVGGGT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre03.g146267.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DVE00.0A0A2K3DVE0_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-49CCCH-type zinc finger protein with ARM repeat domain