PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_46.32
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 267aa    MW: 30887.9 Da    PI: 4.7575
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_46.32genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-151360148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 rg W +eEd++l+++v+ +G g+W+ ++++ g+ R +k+c++rw +yl
  evm.model.supercontig_46.32 13 RGLWKPEEDLILKNYVETHGEGNWADVSEKSGLMRGGKSCRLRWKNYL 60
                                 788*******************************************97 PP
2Myb_DNA-binding52.98.2e-1766111148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                  rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  evm.model.supercontig_46.32  66 RGGMSEEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 111
                                  6779******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.195860IPR017930Myb domain
SuperFamilySSF466894.4E-2811107IPR009057Homeodomain-like
SMARTSM007172.1E-121262IPR001005SANT/Myb domain
PfamPF002495.6E-141360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-211467IPR009057Homeodomain-like
CDDcd001672.88E-91660No hitNo description
PROSITE profilePS5129425.78961115IPR017930Myb domain
SMARTSM007171.4E-1665113IPR001005SANT/Myb domain
PfamPF002493.3E-1566111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2368114IPR009057Homeodomain-like
CDDcd001671.27E-1169111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MENKEKKPQQ VKRGLWKPEE DLILKNYVET HGEGNWADVS EKSGLMRGGK SCRLRWKNYL  60
RPNLKRGGMS EEEEDLIIRM HKLLGNRWSL IAGRLPGRTD NEVKNYWNTH LNKKCQLGKR  120
KTTNHDNCKT NKMKHKKQTN HLINSNYQQN TSAATTAQVL PEENDNNNNN NNDDDNNNTN  180
MEVANYEGES IVTSTWMEDI RSFNYDVIES SVLDLPNNAS LVFDDDQPIE SPLVLPSYYI  240
DDDHDDDDDD DDHEPSFSFF DSFLLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-231311427127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_46.32
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899306.10.0transcription factor MYB82
TrEMBLA0A2C9ULU22e-84A0A2C9ULU2_MANES; Uncharacterized protein
STRINGevm.model.supercontig_46.320.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-69myb domain protein 82