PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_27.156 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 26971.6 Da PI: 6.3043 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 5.7e-16 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+lv +++++G +W++ ++ g+ R++k+c++rw +yl evm.model.supercontig_27.156 19 KGAWSPEEDEKLVAYIRRYGIWNWSKMPKPAGLSRSGKSCRLRWMNYL 66 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 60.6 | 3.4e-19 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e ++ ++++lG++ W+tIa +++ gRt++++k++w+++l evm.model.supercontig_27.156 72 RGKFSKEEEETIIALHNKLGNR-WSTIATKLP-GRTDNDIKNYWHTHL 117 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.041 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.83E-30 | 16 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-12 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-14 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.30E-8 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 27.753 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-17 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-17 | 72 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.28E-11 | 74 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-27 | 74 | 120 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEGGGESSSK LRRCISLNKG AWSPEEDEKL VAYIRRYGIW NWSKMPKPAG LSRSGKSCRL 60 RWMNYLRPNI KRGKFSKEEE ETIIALHNKL GNRWSTIATK LPGRTDNDIK NYWHTHLKKR 120 RKNDINKKPS QEVLIFTKTK ENSTETQELI ISPEPSNSES STVIQMSPCQ PISDLVEERK 180 LTMLEEEIIL YDEEYWATYV DYSLCVLNSD FYNDEVENDV WISLFMDEIY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 17 | 120 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 121 | KKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_27.156 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021902283.1 | 1e-170 | transcription factor MYB13-like | ||||
TrEMBL | A0A315B5H1 | 7e-62 | A0A315B5H1_PRUYE; Myb-related protein Myb4 | ||||
STRING | evm.model.supercontig_27.156 | 1e-169 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 6e-51 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_27.156 |