PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_18.176
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TCP
Protein Properties Length: 364aa    MW: 38742.1 Da    PI: 10.5023
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_18.176genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.24.1e-3687185299
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 
                                    +k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a++ai+++tgt++ +a ++  +++ +  
  evm.model.supercontig_18.176  87 RPKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEQAIIAATGTGTVPAIAMsVNGTLKIP 167
                                   6899************************************************************99999666434444444 PP

                           TCP  82 asnsssgkaaksaakskk 99 
                                   + ++ +++   + ak+k+
  evm.model.supercontig_18.176 168 TTTNAIPEPGDQPAKKKR 185
                                   444444433333332222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-2992166IPR005333Transcription factor, TCP
PROSITE profilePS5136926.35193147IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MATIQKQELE EDEDRITVDL RINGGGDAVR NNIRARQDST TNSPPLAPKE EPDLEDRSPS  60
SRGMMPVSVH VPAAIPMPLA SAPQHPRPKR ASTKDRHTKV EGRGRRIRMP ATCAARIFQL  120
TRELGHKSDG ETIRWLLEHA EQAIIAATGT GTVPAIAMSV NGTLKIPTTT NAIPEPGDQP  180
AKKKRKRPAN SEYVDINDPV SISSGLAPIT APVAATQQAL PQGLVPMWAI PSNAVVPGAF  240
FMVPPMATIA GPSNQPHIFT FPATATPLIN ISARPISSFV SAMQHGANIA AGPVHVQSNP  300
MTSSSTVSGS KPAKKTSVMA SSSTSAMTTT STSGTATTRM LRDFSLEIYD KQELQFMTRS  360
SKH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_18.176
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904289.10.0transcription factor TCP9
SwissprotO646471e-100TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A061DVP11e-167A0A061DVP1_THECC; TCP family transcription factor
STRINGevm.model.supercontig_18.1760.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-97TCP family protein