PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_126.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB | ||||||||
Protein Properties | Length: 186aa MW: 21684.7 Da PI: 9.1513 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.6 | 3.3e-19 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r +WT+eEd++l+++++ +G+++Wk+ a+ g++R++k+c++rw +yl evm.model.supercontig_126.30 17 REAWTAEEDQKLAQVIRIHGPRRWKSLAALAGLNRCGKSCRLRWMNYL 64 789*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 21.9 | 4e-07 | 70 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E++l+++++k+lG + ++ gRt++++k++w+++l evm.model.supercontig_126.30 70 RGNISEQEEDLILRLHKLLG-R--------LP-GRTDNEIKNYWNSHL 107 7889999************9.5........8*.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.87 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.58E-23 | 15 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-15 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-18 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-24 | 19 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.15E-11 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 11.81 | 69 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-6 | 69 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-5 | 70 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-15 | 72 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MPTAPASNRL NKKEINREAW TAEEDQKLAQ VIRIHGPRRW KSLAALAGLN RCGKSCRLRW 60 MNYLRPNIKR GNISEQEEDL ILRLHKLLGR LPGRTDNEIK NYWNSHLSKK ITQNGRVRKK 120 SSTTQQPEPM ETKVMITQME TTDISNSTLV GEDDHSLFDF YIEEEPINNL EWMSEFLNLD 180 HQTWL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-23 | 14 | 111 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_126.30 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021890720.1 | 1e-133 | transcription factor MYB114-like | ||||
TrEMBL | A0A1U8PPB7 | 4e-73 | A0A1U8PPB7_GOSHI; transcription factor MYB114-like | ||||
TrEMBL | A0A2P5WPG5 | 4e-73 | A0A2P5WPG5_GOSBA; Uncharacterized protein | ||||
STRING | evm.model.supercontig_126.30 | 1e-135 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28110.1 | 1e-32 | myb domain protein 41 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_126.30 |