PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_111.24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 10078.5 Da PI: 10.4861 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.5 | 1.5e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd++l+d +k++G g W+t +++ g+ R++k+c++rw +yl evm.model.supercontig_111.24 13 KGAWTTEEDKKLIDWIKEHGEGGWRTLPQRAGLQRCGKSCRLRWTNYL 60 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 6 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.833 | 8 | 64 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-12 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.99E-22 | 14 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.74E-9 | 15 | 60 | No hit | No description |
PROSITE profile | PS50090 | 3.88 | 61 | 87 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-8 | 64 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MTKTPCNIEG LKKGAWTTEE DKKLIDWIKE HGEGGWRTLP QRAGLQRCGK SCRLRWTNYL 60 RPNIKRGEFS QQEKQTIIQL HAANGNK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-13 | 8 | 87 | 2 | 80 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Major regulator of short-chained aliphatic glucosinolates (GLSs) biosynthesis. Together with MYB29/HAG3 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae and Spodoptera exigua) by promoting glucosinolates. {ECO:0000269|PubMed:17420480, ECO:0000269|PubMed:17521412, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:18446225, ECO:0000269|PubMed:20348214, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_111.24 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by glucose, gibberellic acid (GA), jasmonic acid (JA) and salicylic acid (SA). Transiently induced in inflorescence by mechanical stimuli such as touch or wounding, including herbivory-wounding. Up-regulated by sulfur-deficient stress. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17521412, ECO:0000269|PubMed:23115560, ECO:0000269|PubMed:23792303}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021891848.1 | 4e-59 | transcription factor MYB76-like | ||||
Swissprot | Q9SPG2 | 3e-43 | MYB28_ARATH; Transcription factor MYB28 | ||||
TrEMBL | A0A2C9UK15 | 6e-42 | A0A2C9UK15_MANES; Uncharacterized protein | ||||
STRING | evm.model.supercontig_111.24 | 2e-58 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61420.2 | 1e-45 | myb domain protein 28 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_111.24 |