PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_33658.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB_related | ||||||||
Protein Properties | Length: 249aa MW: 28091.8 Da PI: 8.6352 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.2 | 4.4e-19 | 32 | 76 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ evm.TU.contig_33658.1 32 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 76 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.054 | 13 | 26 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 5.56E-23 | 13 | 84 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-12 | 13 | 39 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 29.427 | 27 | 81 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-18 | 31 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-17 | 32 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.53E-14 | 34 | 77 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-25 | 40 | 78 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MRLFYCPVSG LLRCGKSCRL RWINYLRPDL KRGNFTEEED ELIIKLHSLL GNKWSLIAGR 60 LPGRTDNEIK NYWNTHIKRK LISRGIDPQT HRLLNESNPP PVSTQLDFKN SSSSPHPPRI 120 SLNPNSVTLD LKFDEFQPKP KTESVEEAIC SSSGMTTDEE QHKGGSHEYQ EEINLELSVG 180 LAPSRTHSSS AKNNNNNTAE SKLQKVPFLF GTSMVTQPVC LCCHLGSRKS EPCRNCQTAN 240 GLYRYYIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-22 | 13 | 81 | 40 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_33658.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN088495 | 1e-167 | JN088495.1 Vasconcellea monoica clone BAC-MN13O12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911405.1 | 0.0 | transcription factor MYB3-like | ||||
Swissprot | Q9S9K9 | 5e-71 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A2I4GB56 | 7e-97 | A0A2I4GB56_JUGRE; transcription repressor MYB6-like | ||||
STRING | evm.TU.contig_33658.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-73 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_33658.1 |