PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold15610-augustus-gene-0.4-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 576aa MW: 64307.1 Da PI: 4.3404 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.9 | 1.7e-52 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFsk 63 l+pGfrFhPtdeelv +yLk+kv +k++++ + i+ vdiyk+ePwdLp k k+k+++ ewyfFs maker-scaffold15610-augustus-gene-0.4-mRNA-1 10 LAPGFRFHPTDEELVRYYLKRKVLNKPFKF-DPISVVDIYKSEPWDLPsKsKLKSRDLEWYFFSA 73 579**************************9.99**************95247777777******* PP NAM 64 rdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dkky +++r+nrat++gyWk+tgkd++v + ++++vg+kktLv+++grap+g +++Wvmheyrl maker-scaffold15610-augustus-gene-0.4-mRNA-1 74 LDKKYGNSSRTNRATEKGYWKTTGKDRPVRQ-NSRTVGMKKTLVYHNGRAPRGARSNWVMHEYRL 137 ******************************9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.09E-60 | 8 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.082 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-28 | 12 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 576 aa Download sequence Send to blast |
MGRDDSATSL APGFRFHPTD EELVRYYLKR KVLNKPFKFD PISVVDIYKS EPWDLPSKSK 60 LKSRDLEWYF FSALDKKYGN SSRTNRATEK GYWKTTGKDR PVRQNSRTVG MKKTLVYHNG 120 RAPRGARSNW VMHEYRLIDE DLEKSGLVLD AFVLCRIFQK SGTGPKNGEQ YGAPFVEEEW 180 EDDDVEAFMP GEVAAAAAEE VMVGDDAFVE TNDLDQNLEI NIPSEYPPPL NFYYGETSNH 240 AEHSGEFLED DQKPIIGTGE TFEPQFDQFL NIPEQYEMGT NPVKDEYYVE SSNNVNPAEV 300 NYSLGGFVES SNNNVNPAEV NYSFDEFYMD AADNAPMGDG LYLEANDLSN PVEADSEGFD 360 MLDEYLTFFD ADDDNSQHLT FDPSEIMGTD NSVFDQAPQK HENGGTDQVF NETLHLPEAQ 420 GNNDASSSKH KPEATIYESD DKHPFVKRAS QMLGSIPAPP AFAAEFPAKD HAALRLHSAA 480 QSSSSAHVTA GMIRIRNMTL TGNGMDWSLG KNDDVGLLLS FVLPQADMSS ANSVPLAGSL 540 TGKGSSVVSR CWCFFLFFWV LLLSVSFKIG SYVCIK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-47 | 3 | 160 | 7 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023879666.1 | 0.0 | NAC domain-containing protein 53-like | ||||
Swissprot | Q84K00 | 1e-167 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | A0A2N9IUB6 | 0.0 | A0A2N9IUB6_FAGSY; Uncharacterized protein | ||||
STRING | EMJ20071 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5347 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 1e-139 | NAC domain containing protein 53 |