PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022200
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 355aa    MW: 38913.3 Da    PI: 6.2704
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022200genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.2e-18245279135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Cla022200 245 CMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 279
                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169927.2E-8322334IPR016679Transcription factor, GATA, plant
Gene3DG3DSA:3.30.50.103.7E-15239276IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.637239275IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-17239289IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-15241303No hitNo description
CDDcd002027.55E-15244291No hitNo description
PfamPF003207.3E-16245279IPR000679Zinc finger, GATA-type
PROSITE patternPS003440245270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEAPEYFQIN GYCSQFATHS SSDNDSATAT ATATAAGPEH FIVEELLDFS NDDDAVIGDG  60
GGLFYNNNNN GNNNSTECSA VTVIESCNSS SFLEDISGSN LTDAHFSSEL CVPYDDLAEL  120
EWLSHFVEES FSSEDMQKLE LISGVKVKEP AQSPQPTVSH GRKAAAIFKP DIVSVPAKAR  180
SKRSRAVPSN WNNSRLLPLS PTTEPEITTT AGPPHPIKKP PPKAATAKKK DSPEVGVSSG  240
EGRKCMHCAT DKTPQWRTGP MGPKTLCNAC GVRYKSGRLV PEYRPAASPT FVLTKHSNSH  300
RKVLELRRQK ELLRAQQQQQ QHLLLDHHQD MIFDASNGDD YLIHQHVGPD FRQLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445001.10.0PREDICTED: GATA transcription factor 12-like
SwissprotO826326e-88GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A1S3BBN70.0A0A1S3BBN7_CUCME; GATA transcription factor
STRINGXP_008445001.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-78GATA transcription factor 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]