PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008472
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 338aa    MW: 36495.9 Da    PI: 5.3925
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008472genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23.1e-21134183255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a+++a+++++g
  Cla008472 134 KYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAESAARAYDEAALRFRG 183
                8********.**********76....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-33133192IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23134192IPR016177DNA-binding domain
PROSITE profilePS5103225.488134191IPR001471AP2/ERF domain
CDDcd000184.54E-34134193No hitNo description
SMARTSM003802.4E-36134197IPR001471AP2/ERF domain
PfamPF008472.7E-14134183IPR001471AP2/ERF domain
PRINTSPR003676.5E-12135146IPR001471AP2/ERF domain
PRINTSPR003676.5E-12157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MADPEDTKAP EMLFLGFSRE MEMSAMVSAL THVVAGDVPD SDSYCDSTWS FSSVSASAAP  60
SAPHGGGRYK RGRTLAMEDG GSVSTWSPSS VISGDSSNLV IIRPQTGSVA MENSVYEYGG  120
EIPTTAEEPP ARRKYRGVRQ RPWGKWAAEI RDPYKAARVW LGTFDTAESA ARAYDEAALR  180
FRGNKAKLNF PENVRLRQLP TTESSATHFS SSNSTNTLLA IPTNSESIVH SRPTANLQSS  240
SDTSPAKFLN FSDGQLQTPI DMYSEINFSS STSMPSPFYS SSYGSTNSQF SSSSSSSPVV  300
SLSFPPQSSS GRRNNAGDNE HYPISDWSEF FNHAASSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-23133194163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023545181.11e-178ethylene-responsive transcription factor ABR1
TrEMBLA0A1S3B3121e-176A0A1S3B312_CUCME; ethylene-responsive transcription factor ABR1
STRINGXP_008440983.11e-176(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-28ethylene response factor 110