PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G64750.1 | ||||||||
Common Name | ABR1, ERF111, MVP7.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 391aa MW: 42813.7 Da PI: 8.4252 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.9e-20 | 184 | 233 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f+ ae Aa+a+++a+++++g AT5G64750.1 184 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDNAESAARAYDEAALRFRG 233 7********.**********66.....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.4E-36 | 184 | 247 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-13 | 184 | 233 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-22 | 184 | 242 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.106 | 184 | 241 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.5E-32 | 184 | 242 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 185 | 196 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.54E-26 | 192 | 243 | No hit | No description |
PRINTS | PR00367 | 5.2E-11 | 207 | 223 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MCVLKVANQE DNVGKKAESI RDDDHRTLSE IDQWLYLFAA EDDHHRHSFP TQQPPPSSSS 60 SSLISGFSRE MEMSAIVSAL THVVAGNVPQ HQQGGGEGSG EGTSNSSSSS GQKRRREVEE 120 GGAKAVKAAN TLTVDQYFSG GSSTSKVREA SSNMSGPGPT YEYTTTATAS SETSSFSGDQ 180 PRRRYRGVRQ RPWGKWAAEI RDPFKAARVW LGTFDNAESA ARAYDEAALR FRGNKAKLNF 240 PENVKLVRPA STEAQPVHQT AAQRPTQSRN SGSTTTLLPI RPASNQSVHS QPLMQSYNLS 300 YSEMARQQQQ FQQHHQQSLD LYDQMSFPLR FGHTGGSMMQ STSSSSSHSR PLFSPAAVQP 360 PPESASETGY LQDIQWPSDK TSNNYNNSPS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-22 | 183 | 244 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145359655 | 0.0 | ||||
Expression Atlas | AT5G64750 | - | ||||
AtGenExpress | AT5G64750 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous with lower levels in seeds and siliques. {ECO:0000269|PubMed:16227468}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a putative transcription factor containing an AP2 domain. Is a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. Expressed in response to ABA, osmotic stress, sugar stress and drought. Mutants are hypersensitive to these stresses. May be involved in regulation of ABA mediated stress response. | |||||
UniProt | Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00584 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G64750.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | abscisic acid |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G14920 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G64750 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY140092 | 0.0 | AY140092.1 Arabidopsis thaliana putative protein (At5g64750) mRNA, complete cds. | |||
GenBank | BT008480 | 0.0 | BT008480.1 Arabidopsis thaliana At5g64750 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_201280.1 | 0.0 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9FGF8 | 0.0 | ABR1_ARATH; Ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A178UFQ7 | 0.0 | A0A178UFQ7_ARATH; ABR1 | ||||
STRING | AT5G64750.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9118 | 21 | 37 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT5G64750.1 |
Entrez Gene | 836596 |
iHOP | AT5G64750 |
wikigenes | AT5G64750 |