PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G50080.1
Common NameERF110, MPF21.9
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 220aa    MW: 24257 Da    PI: 9.4484
Description ethylene response factor 110
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G50080.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.9e-2176126256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                  +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g+
  AT5G50080.1  76 RYRGVRQRP-WGKWAAEIRDP-----HraARVWLGTFDTAEAAARAYDEAALRFRGN 126
                  7********.**********7.....338*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.69976133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-3376134IPR001471AP2/ERF domain
PfamPF008471.2E-1476125IPR001471AP2/ERF domain
SMARTSM003802.7E-3676139IPR001471AP2/ERF domain
CDDcd000183.58E-2076135No hitNo description
SuperFamilySSF541716.47E-2376134IPR016177DNA-binding domain
PRINTSPR003674.0E-127788IPR001471AP2/ERF domain
PRINTSPR003674.0E-1299115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSAMVSALTQ VVSARSQTEA EGAHSSSSSA GHKRGWLGID SAPIPSSFAR VDSSHNPIEE  60
SMSKAFPEEA REKKRRYRGV RQRPWGKWAA EIRDPHRAAR VWLGTFDTAE AAARAYDEAA  120
LRFRGNKAKL NFPEDVRILP PPPPLLRSPA DTVANKAEED LINYWSYTKL LQSSGQRSFL  180
ERGQEESSNI FEHSPMEQPL PPSSSGPSSS NFPAPSLPNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2373136266ATERF1
3gcc_A4e-2373136266ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO3566499910.0
Expression AtlasAT5G50080-
AtGenExpressAT5G50080-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. Data indicate the biological role of the Ser-62-phosphorylated isoform of ethylene-responsive transcription factor ERF110 in transgenic plants.
    [PMID: 22442259]
  2. Data indicate that the expression and phosphorylation of ERF110 were regulated by ethylene via both Ethylene-Insensitive2-dependent and -independent pathways, which constitute a dual-and-opposing mechanism for ethylene in the regulation of bolting.
    [PMID: 23188807]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G50080.1
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G50080
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5803780.0AJ580378.1 Arabidopsis thaliana mRNA for putative AP2 domain transcription factor, clone At5g5008-like.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199819.31e-159ethylene response factor 110
SwissprotQ70II31e-160EF110_ARATH; Ethylene-responsive transcription factor ERF110
TrEMBLA0A178U7F51e-157A0A178U7F5_ARATH; Uncharacterized protein
STRINGAT5G50080.11e-158(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Gong W, et al.
    Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes.
    Plant Physiol., 2004. 135(2): p. 773-82
    [PMID:15208423]
  3. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  4. Li Y, et al.
    Absolute quantitation of isoforms of post-translationally modified proteins in transgenic organism.
    Mol. Cell Proteomics, 2012. 11(8): p. 272-85
    [PMID:22442259]
  5. Zhu L,Liu D,Li Y,Li N
    Functional phosphoproteomic analysis reveals that a serine-62-phosphorylated isoform of ethylene response factor110 is involved in Arabidopsis bolting.
    Plant Physiol., 2013. 161(2): p. 904-17
    [PMID:23188807]