PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006939
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 389aa    MW: 41942.8 Da    PI: 9.9295
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006939genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1202.8e-37711732101
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssasnsssg..ka 90 
                ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++++a ++         +         +sss+  +a
  Cla006939  71 PPKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMsvngtlkipT--------TTSSSNqdSA 162
                5799************************************************************999995554333333221........2222221112 PP

        TCP  91 aksaakskksq 101
                 +saak+++++
  Cla006939 163 DPSAAKKRRKR 173
                22222111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3076173IPR005333Transcription factor, TCP
PROSITE profilePS5136926.20477131IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MADIQKQELD DDDDSPPTHL PINDSDSSRI DLLSLPPKQE HPDSDDSNLP PSGIQLLKFT  60
ADIAKSVSSL PPKRPSTKDR HTKVEGRGRR IRIPATCAAR IFQLTRELGH KSDGETIRWL  120
LERAEPAIIA ATGTGTIPAI AMSVNGTLKI PTTTSSSNQD SADPSAAKKR RKRPANSDYV  180
DVNDALSVSV SASNGVVQAG TVAGSPAVQQ AFPPGFVPVW AIPSNAIIPG AVFMVPSVAC  240
SSTRPQLFSF PAPAAPLINT TARPISTFPS KPDTSHIQSS PTNQSSSTSS SSASKSQSVM  300
APISSSTVPT SGKTTTQMLR DFSLEIYDKE EXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXR ASIHVSLVLK TLTRRKERK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167171KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00635PBMTransfer from PK14653.1Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819251e-144LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132651e-144LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460149.10.0PREDICTED: transcription factor TCP9
SwissprotO646471e-81TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A1S3CBF30.0A0A1S3CBF3_CUCME; transcription factor TCP9
STRINGXP_008460149.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.18e-65TCP family protein