PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.6400s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 275aa MW: 31354.7 Da PI: 5.3665 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.1 | 9.8e-19 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv+ v +G +W+ Iar g++Rt+k+c++rw++yl Cagra.6400s0003.1.p 22 KGPWTEEEDAILVNFVSIHGDARWNHIARSSGLKRTGKSCRLRWLNYL 69 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.8 | 7e-15 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE+ +++++ ++G++ W++Ia++++ gRt++++k++w++ Cagra.6400s0003.1.p 75 RGNITLEEQFMILKLHSLWGNR-WSKIAQYLP-GRTDNEIKNYWRT 118 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.95 | 17 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-30 | 19 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-16 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.83E-12 | 24 | 69 | No hit | No description |
SMART | SM00717 | 1.1E-13 | 74 | 122 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.098 | 74 | 124 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.8E-13 | 75 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-22 | 77 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.90E-10 | 79 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MEDYERNSNS PTHHEEDSDV RKGPWTEEED AILVNFVSIH GDARWNHIAR SSGLKRTGKS 60 CRLRWLNYLR PDVRRGNITL EEQFMILKLH SLWGNRWSKI AQYLPGRTDN EIKNYWRTRV 120 QKQAKHLRCD VNSNLFKDTM RNVWMPRLVE RINAQSSPST CELSESMITD PGQRVDEPSP 180 VEPGFLQFNP IHHDQQLVPA AEVSAASSNS PAETLSDVVV NGSAGYDPIG QTGFAGFNDW 240 GCVGGDNMWT NDDESLWFLQ DQLLSHETTS YSYN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-26 | 19 | 124 | 4 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.6400s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229140 | 0.0 | AK229140.1 Arabidopsis thaliana mRNA for MYB transcription factor, complete cds, clone: RAFL16-42-L19. | |||
GenBank | AY519579 | 0.0 | AY519579.1 Arabidopsis thaliana MYB transcription factor (At2g47190) mRNA, complete cds. | |||
GenBank | BT010949 | 0.0 | BT010949.1 Arabidopsis thaliana At2g47190 gene, complete cds. | |||
GenBank | BT011656 | 0.0 | BT011656.1 Arabidopsis thaliana At2g47190 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294780.1 | 0.0 | transcription factor MYB78 | ||||
TrEMBL | R0HUB1 | 0.0 | R0HUB1_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.6400s0003.1.p | 0.0 | (Capsella grandiflora) | ||||
STRING | XP_006294780.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47190.1 | 1e-175 | myb domain protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.6400s0003.1.p |