PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1671s0249.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 272aa    MW: 30475.7 Da    PI: 6.4344
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1671s0249.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+ eEd+ll ++++++G ++W++ ++  g+ R++k+c++rw +yl
  Cagra.1671s0249.1.p 14 KGPWSGEEDQLLTNYITLHGHPNWRALPKLAGLLRCGKSCRLRWINYL 61
                         79******************************99************97 PP
2Myb_DNA-binding46.87e-1567112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T  E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
  Cagra.1671s0249.1.p  67 RGNFTSLEEDTIIHLHHILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-23564IPR009057Homeodomain-like
PROSITE profilePS5129413.936961IPR017930Myb domain
SuperFamilySSF466896.12E-2811108IPR009057Homeodomain-like
SMARTSM007173.2E-121363IPR001005SANT/Myb domain
PfamPF002492.0E-131461IPR001005SANT/Myb domain
CDDcd001677.27E-91661No hitNo description
PROSITE profilePS5129422.3762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-2465115IPR009057Homeodomain-like
SMARTSM007171.3E-1266114IPR001005SANT/Myb domain
PfamPF002491.7E-1367112IPR001005SANT/Myb domain
CDDcd001672.62E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRRPCCEKT GLKKGPWSGE EDQLLTNYIT LHGHPNWRAL PKLAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TSLEEDTIIH LHHILGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRVLLHQ  120
NQDGENNKEA FVDTTTTAAA KRPTSPQQQQ STSSGDVSAV TTSGNNNDIS NNSNSNSKDS  180
ATSSKDVLAI IDESFWSEVV SSMDCNISGD DVKSETKIEN SWEDSLDRNH KDMGNNYSKL  240
YNHDMEFWFD HLTSTTTSLI AGEISDDISE F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-25121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00127DAPTransfer from AT1G06180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1671s0249.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934371e-129AB493437.1 Arabidopsis thaliana At1g06180 mRNA for hypothetical protein, partial cds, clone: RAAt1g06180.
GenBankAY5195501e-129AY519550.1 Arabidopsis thaliana MYB transcription factor (At1g06180) mRNA, complete cds.
GenBankBT0251731e-129BT025173.1 Arabidopsis thaliana At1g06180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303456.21e-172transcription factor MYB13
SwissprotQ9LNC91e-127MYB13_ARATH; Transcription factor MYB13
TrEMBLA0A178W7021e-125A0A178W702_ARATH; MYB13
STRINGCagra.1671s0249.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.11e-111myb domain protein 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]