PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0463s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 28273.8 Da PI: 7.3417 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.4e-17 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd ll ++v+++G g W ++ + g++R++k+c++rw++yl Cagra.0463s0008.1.p 10 KGTWTAEEDSLLRQYVEKYGEGKWQQVPLRAGLNRCRKSCRLRWLNYL 57 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.3e-16 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +t+E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++l Cagra.0463s0008.1.p 63 RGKLSTDEVDLLLRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 108 7999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-22 | 5 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.264 | 5 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.37E-29 | 7 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-15 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.10E-11 | 12 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-22 | 61 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.27 | 62 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-14 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 63 | 108 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MEGSSNGLRK GTWTAEEDSL LRQYVEKYGE GKWQQVPLRA GLNRCRKSCR LRWLNYLKPG 60 INRGKLSTDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDV KNYWNTHLSK RHEPSFCKAE 120 MKNKIITSPP TTPPQKIKVF KPRPRSFSSK NGSSYLNGFP QFDVIPPWSG LNNDNIGESS 180 ITCGKDEGNC ESLYNLMDGD QNKWLESLLE ESQEADAPGP EATTTELGAT LAFDVEQIWN 240 LFDGENVELD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-21 | 8 | 111 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0463s0008.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470513.1 | 1e-133 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q9ZTC3 | 1e-120 | MYB90_ARATH; Transcription factor MYB90 | ||||
TrEMBL | D7KTP4 | 1e-129 | D7KTP4_ARALL; Uncharacterized protein | ||||
STRING | Cagra.0463s0008.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66390.1 | 1e-114 | myb domain protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0463s0008.1.p |