PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0248s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 448aa    MW: 49826 Da    PI: 5.6799
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0248s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.88.6e-14112134426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          e C+f++rtG CkyG++CkF+H+
  Cagra.0248s0008.1.p 112 EDCSFYMRTGSCKYGSSCKFNHP 134
                          89********************8 PP
2zf-CCCH31.92.3e-10160181526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++++rtG CkyG++C+F+H 
  Cagra.0248s0008.1.p 160 ECKYYFRTGGCKYGESCRFSHM 181
                          6********************6 PP
3zf-CCCH38.81.5e-12203227226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C+f++r+G Ck+G+ CkF+H+
  Cagra.0248s0008.1.p 203 GEKECPFYMRNGSCKFGSDCKFNHP 227
                          7899********************9 PP
4zf-CCCH19.81.4e-06348373227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C ++++tG Ck+  +Ck++H++
  Cagra.0248s0008.1.p 348 DQPECTYYLKTGDCKFKYKCKYHHPK 373
                          689*********************96 PP
5zf-CCCH32.91.1e-10394418226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C +++r+G+Ck+G+ C+F H+
  Cagra.0248s0008.1.p 394 DQSMCTHYSRYGICKFGPACRFDHS 418
                          5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-6106136IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159108136IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-11112134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-6114134IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.051155183IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-6156184IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-8160181IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-7161183IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6201228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286201229IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10203227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6203228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4207226IPR000571Zinc finger, CCCH-type
SMARTSM003560.079346373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112346374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-5350376IPR000571Zinc finger, CCCH-type
PfamPF146080.45352372No hitNo description
SMARTSM003560.019392419IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906392420IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6393420IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-5396418IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-7398418IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MSKPEEISDP NPSVPDPKPP SRSSSDEATV TVADGDHSDL NQVSEELSDQ FKNVGLDDSA  60
NELSVPISGY EGNVETDSRA LGSDQKEEED ESERESTVER RMIVYPVRPD AEDCSFYMRT  120
GSCKYGSSCK FNHPARRRLQ IGREKARERE EEVDNLKLME CKYYFRTGGC KYGESCRFSH  180
MKEQTSLASR PELNFLGLPI RPGEKECPFY MRNGSCKFGS DCKFNHPDPT AIGGVDSPLF  240
RGNNGGSVGS FSPKAPPPQV SSTSWSSSRH MNGTGTAPFI PAMFPQNRGV SSPQASEWNG  300
YQGSSAYPPE RSVLPPSTYS MNNSLAETSS FSQYQQQIPV EEFPERPDQP ECTYYLKTGD  360
CKFKYKCKYH HPKNRLPKQA PFSFNDKGLP LRPDQSMCTH YSRYGICKFG PACRFDHSIP  420
PTFSPSSSLT VEAPQVGANG NEDDSWH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0248s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287900.0AK228790.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-10-O16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282213.10.0zinc finger CCCH domain-containing protein 67 isoform X2
SwissprotQ5RJC50.0C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLR0F1G10.0R0F1G1_9BRAS; Uncharacterized protein
STRINGCagra.0248s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.10.0C3H family protein