PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0084s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 202aa    MW: 23306.4 Da    PI: 9.9754
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0084s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-161360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W +eEd +l+ +v+ +G g+W+ I+r+ g++R +k+c++rw +yl
  Cagra.0084s0008.1.p 13 RGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYL 60
                         788*****************************99************97 PP
2Myb_DNA-binding51.91.8e-1666111148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+++++E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  Cagra.0084s0008.1.p  66 RGSMSPQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 111
                          899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.392860IPR017930Myb domain
SMARTSM007172.9E-141262IPR001005SANT/Myb domain
SuperFamilySSF466894.77E-2912107IPR009057Homeodomain-like
PfamPF002491.6E-141360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-221467IPR009057Homeodomain-like
CDDcd001679.72E-111660No hitNo description
PROSITE profilePS5129425.72961115IPR017930Myb domain
SMARTSM007174.9E-1665113IPR001005SANT/Myb domain
PfamPF002494.7E-1566111IPR001005SANT/Myb domain
CDDcd001672.60E-1168111No hitNo description
Gene3DG3DSA:1.10.10.608.0E-2468114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEQKREGKSY VKRGLWKPEE DMILKSYVET HGEGNWADIS RRSGLKRGGK SCRLRWKNYL  60
RPNIKRGSMS PQEQDLIIRM HKLLGNRWSL IAGRLPGRTD NEVKNYWNTH LNKKSNSRKQ  120
NAPESVAATT CTDKPVISTE VRRSHGDGEE KSMARNTWME ETNSFDYDVR IGSPLPLISH  180
YPDNTLVFDP CFAFTDFYPL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-241111425127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0084s0008.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196370.0AY519637.1 Arabidopsis thaliana MYB transcription factor (At5g52600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282345.21e-148transcription factor MYB82
SwissprotQ9LTF71e-129MYB82_ARATH; Transcription factor MYB82
TrEMBLR0GVN81e-147R0GVN8_9BRAS; Uncharacterized protein
STRINGCagra.0084s0008.1.p1e-150(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-132myb domain protein 82