PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g17270 | ||||||||
Common Name | GSCOC_T00038288001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | TCP | ||||||||
Protein Properties | Length: 271aa MW: 28298.3 Da PI: 9.6819 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.2 | 6e-38 | 32 | 117 | 3 | 88 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 +k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ +++s ss+s+++++ Cc11_g17270 32 PKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKTDGETIQWLLQQAEPSIIAATGTGTIPASALATAASGSSVSEQGNS 117 7999****************************************************************888444444444433332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.0E-31 | 36 | 114 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.45 | 37 | 91 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MAENKPTDIN KDFRILASSD NKDDGGKKQL VPKRSSNKDR HKKVDGRGRR IRMPALCAAR 60 IFQLTRELGH KTDGETIQWL LQQAEPSIIA ATGTGTIPAS ALATAASGSS VSEQGNSVAT 120 GLHHPKFDEV GPGMGIRMNW AALGGNIGRS PHVPAAAWPS VAAGFGSGFL HNSTLLSSNS 180 VNQNLNSGPK FGFQGLEFPN SAGFGQQLPG LELGLSQDGH MGSLNFQALQ QFYQQIGQSG 240 DGAGSGSANN QQQHHPPPAA GGDDSQGSRQ * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00641 | PBM | Transfer from Manes.12G007700 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027097566.1 | 0.0 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 8e-61 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A068UY75 | 0.0 | A0A068UY75_COFCA; Uncharacterized protein | ||||
STRING | XP_006484165.1 | 2e-99 | (Citrus sinensis) | ||||
STRING | XP_006437974.1 | 2e-99 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 6e-61 | TCP family protein |