PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g04410
Common NameGSCOC_T00004467001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 438aa    MW: 47775.3 Da    PI: 5.1335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g04410genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12365410655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR +i +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Cc01_g04410 365 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 410
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.262359409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16362423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-12363414No hitNo description
Gene3DG3DSA:4.10.280.101.6E-15364420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-14365415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9365410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDFQRSNQHQ QMSGGLTRYR SAPSSYFSSF FDAAADIIPR SGGGFGGDDL DHFLNRFMPS  60
NRVNAQAEDS NSNNSFANSM NMQQSQSQFV ASMKQEAEVM QQPEQLQQLQ QTNQNDYSQI  120
SQQMMYQSQA QVQQNTNNTQ LSSASAGDNS YRLLSSVNSN RLTPAKIESG GGISNLIRYN  180
SSPAGLFANI NIENEYGAMR GMGNFGAGNN ANAEASFSSA SRFKSQMDFS SAQATSSGLM  240
SPISEIDSTG MGDNNLGDKK FGEGQRNDSG YITGFPVTSW DDSALLSDSF LKGLGDDDDD  300
SKTLSNAVAS ENQSNEGRNR PSTLLAHHLS LPNTSDELSA IETLMQDSVL CKLRAKRGCA  360
THPRSIAERV RRTKISERMR KLQELVPNMD KQTNTADMLD LAVDYIKDLQ KQVKTLSDNR  420
AKCTCFNQKS CGSEGSS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027077375.10.0transcription factor bHLH130-like isoform X3
RefseqXP_027147994.10.0transcription factor bHLH130-like isoform X2
TrEMBLA0A068VCJ10.0A0A068VCJ1_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000612841e-133(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.11e-53bHLH family protein