PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g39630.1
Common NameLOC4345984, Os08g0506700, OsJ_27873, OSJNBa0025J22.40, OSNPB_080506700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 400aa    MW: 41632.3 Da    PI: 8.233
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g39630.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.3e-13330375655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  LOC_Os08g39630.1 330 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 375
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.281324374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-16327384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-12328379No hitNo description
Gene3DG3DSA:4.10.280.103.1E-15329386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13330380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10330375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPAMS SSGLLRYRSA PSTLLAEFCD DFLPPAAAPR AASPDADNVF  60
SRFLADHQIR DKSPPATAAA AAAAAHFPDD PTMATQHHHQ QQMMFQHHPQ QMASVEGLYR  120
TVSSTGIDAA TAAANAAGGG GGGLLRQSSS PAGFLNHLNM DNGYGSMLRA GMAAAGGGVG  180
FRNGANAAAA ADSPGGSGGR LKGQLSFSSR QGSLMSQISE MDSEELGGSS PEGAGGGGGG  240
GGRGYLSGYP MSSGWEESSL MSDTNISGVK RQRDSSEPSQ NGGGGGGLAH QFSLPKTSSE  300
MAAIEKFLQF QDAVPCKIRA KRGCATHPRS IAERVRRTRI SERIRKLQEL VPNMDKQTNT  360
ADMLDLAVDY IKDLQKQVKG LNDSRANCTC SAKHQQYSG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.53110.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329853150.0
Expression AtlasQ6Z3R6-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBM25215497Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g39630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g39630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001060.0AK100106.1 Oryza sativa Japonica Group cDNA clone:J023004M08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650699.10.0transcription factor bHLH130
TrEMBLQ6Z3R60.0Q6Z3R6_ORYSJ; Os08g0506700 protein
STRINGOS08T0506700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-48bHLH family protein