PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10028398m | ||||||||
Common Name | CICLE_v10028398mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 459aa MW: 50885.7 Da PI: 6.6682 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.8 | 7.7e-11 | 14 | 45 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g W++eEde+l+++++++G g+W+++++ g Ciclev10028398m 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAG 45 678**************************988 PP | |||||||
2 | Myb_DNA-binding | 41.9 | 2.3e-13 | 95 | 137 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++ +E+ l+v++++ lG++ W+ Ia+ ++ gRt++++k+ w+ Ciclev10028398m 95 RGAFSVQEESLIVELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWN 137 89********************.*********.*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 6 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.115 | 9 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.04E-8 | 12 | 46 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-8 | 13 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-8 | 14 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.10E-8 | 17 | 89 | No hit | No description |
SuperFamily | SSF46689 | 1.42E-19 | 75 | 149 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.04E-8 | 76 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.111 | 90 | 144 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 93 | 144 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-11 | 94 | 142 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-12 | 95 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.61E-8 | 97 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGKIYLE NNNHACSVIL 60 MFNAFNTMFL LAGLQRCGKS CRLRWINYLR PDLKRGAFSV QEESLIVELH AVLGNRWSQI 120 AAQLPGRTDN EIKNLWNSSI KKKLRQRGID PNTHKPLSEV ENDKEQQLTV INKNSDKASA 180 ESSKDLAAEI MHPLEVSSSS EINTNNNNNA SMLNLVDKFA AAASNNESST TSCRPDLMGY 240 FPFQKLNYGP NIGLSVNTNT SSLFFNPNST SSEMISEFNS SIIPSISASV FQTPIRVKPS 300 ISLPSENPSV GTSDINGIQN WEPSSFSNNC STSNGSTTSI ELQSSSSFFE GNVFSWGITA 360 DCGKSNDQEA QIRALEGDQE DIKWSEYLNT PFFLGSTIQN HQTSQSMYSD VKPEAHFISE 420 GSNTTTWIQN QHQQASQTTP AMYTKDLQRL SVAFGQTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 12 | 144 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00134 | DAP | Transfer from AT1G09540 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024035251.1 | 0.0 | transcription factor MYB61 | ||||
TrEMBL | V4SEH5 | 0.0 | V4SEH5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006423960.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 1e-117 | myb domain protein 61 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10028398m |
Entrez Gene | 18033957 |