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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G09540.1 | ||||||||
Common Name | ATMYB61, MYB61 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 366aa MW: 40891.4 Da PI: 8.0733 | ||||||||
Description | myb domain protein 61 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ ++ +G g+W+++++ g+ R++k+c++rw +yl AT1G09540.1 14 KGLWSPEEDEKLLTHITNHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.6e-15 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++++eE+ l+v++++ lG++ W+ Ia++++ gRt++++k+ w+ AT1G09540.1 67 RGAFSPEEENLIVELHAVLGNR-WSQIASRLP-GRTDNEIKNLWN 109 89********************.*********.*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.513 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.49E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.02E-10 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.983 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-14 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.57E-10 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0005352 | anatomy | xylem | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT DNEIKNLWNS SIKKKLKQRG 120 IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF 180 QKLNFNSNLG LSVTTDSSLC SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS 240 GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN 300 TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV 360 SFGQSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.10913 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 264556_at | 0.0 | ||||
Expression Atlas | AT1G09540 | - | ||||
AtGenExpress | AT1G09540 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed specifically in guard cells (PubMed:16005292). Expressed in sink tissues, such as xylem, roots and developing seeds (PubMed:22708996). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:22708996}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size. | |||||
UniProt | Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00134 | DAP | 27203113 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G09540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | auxin |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G14920 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G09540 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY063939 | 0.0 | AY063939.1 Arabidopsis thaliana putative transcription factor (At1g09540) mRNA, complete cds. | |||
GenBank | AY096523 | 0.0 | AY096523.1 Arabidopsis thaliana putative transcription factor protein (At1g09540) mRNA, complete cds. | |||
GenBank | AY519552 | 0.0 | AY519552.1 Arabidopsis thaliana MYB transcription factor (At1g09540) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_172425.2 | 0.0 | myb domain protein 61 | ||||
Swissprot | Q8VZQ2 | 0.0 | MYB61_ARATH; Transcription factor MYB61 | ||||
TrEMBL | A0A178WLE4 | 0.0 | A0A178WLE4_ARATH; MYB61 | ||||
STRING | AT1G09540.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 | Representative plant | OGRP5 | 17 | 1784 |
Link Out ? help Back to Top | |
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Phytozome | AT1G09540.1 |
Entrez Gene | 837480 |
iHOP | AT1G09540 |
wikigenes | AT1G09540 |