PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023930m
Common NameCICLE_v10023930mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 385aa    MW: 43026.1 Da    PI: 5.7545
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023930mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +++ +v ++G  +W++++++ g++R++k+c++rw +yl
  Ciclev10023930m 14 KGIWSAEEDAKILAYVSKHGACNWTAVPKKAGLRRCGKSCRLRWTNYL 61
                     678*******************************************97 PP
2Myb_DNA-binding44.63.4e-1469110346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T++E+e ++++++  G++ W+ Ia+ ++ gRt++++k++w++
  Ciclev10023930m  69 SFTPQEEEMIIRLHAAIGSR-WSIIAQQLP-GRTDNDVKNYWNT 110
                      79******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.708961IPR017930Myb domain
SuperFamilySSF466894.4E-2911108IPR009057Homeodomain-like
SMARTSM007171.6E-131363IPR001005SANT/Myb domain
PfamPF002494.8E-151461IPR001005SANT/Myb domain
CDDcd001674.06E-111761No hitNo description
PROSITE profilePS5129423.01562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2465116IPR009057Homeodomain-like
SMARTSM007179.8E-1466114IPR001005SANT/Myb domain
CDDcd001672.45E-1069112No hitNo description
PfamPF002494.4E-1369110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGRPPCCDKL NVKKGIWSAE EDAKILAYVS KHGACNWTAV PKKAGLRRCG KSCRLRWTNY  60
LRPDLKHESF TPQEEEMIIR LHAAIGSRWS IIAQQLPGRT DNDVKNYWNT KLRKKLTEMG  120
IDPVTHKPFS QILADYGNIG GLPKSGTRIG CLNRDMSKNA FMMQKPEQHE SPFQVFSNIS  180
SHLMTMVSPN VEPIKDTLLN HYNDHSNSMD LLAQLQAVRL VAEASNNNCA TNANESISPP  240
QIFFNEAGSL SSSSSSSSTC STAGQEKSPL NFTWEDFLLD DDDAFLSADI PQAQEQEHDT  300
HSMVEFSSKD FTNHTRNVMP QNQNNNETAI TQVNNGVQRM DSGGPSYEFA AASSSFVEAM  360
LDRENDMLLE FPNLLVLDEP HFYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818131e-33LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132561e-33LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439694.10.0transcription factor MYB35
TrEMBLV4VJQ00.0V4VJQ0_9ROSI; Uncharacterized protein
STRINGXP_006439694.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-75MYB family protein