PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021698m
Common NameCICLE_v10020967mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 268aa    MW: 29421.2 Da    PI: 5.7497
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021698mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74e-112361248
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Ciclev10021698m  2 IIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 36
                     5788899****.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.96140IPR017930Myb domain
SMARTSM007170.002138IPR001005SANT/Myb domain
CDDcd001671.40E-7135No hitNo description
Gene3DG3DSA:1.10.10.601.2E-15137IPR009057Homeodomain-like
SuperFamilySSF466896.55E-10242IPR009057Homeodomain-like
PfamPF002498.9E-10236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MIIHLQALLG NRWAAIASYL PQRTDNDIKN YWNTHLKKKL KKLQTGSDGG QNNQDGFSST  60
SQQASNKGQW ERRLQTDIHM AKQALCEALS LDKTSPTSPA NLLLSPDQSN LKPMSSTTYN  120
NTPYASNAEN ISRLLQNWMK NPPKISETTQ DSFTNTAYAS AAGSGSNISS EGALSATTPE  180
GFDSLFSFNS SNSDASQSET TANLTSETSL FQDESKPKLD SRHHHHHQVP LTLLEKWLFD  240
DVAAAHQGHD DDDLINMSLE DSTVGFF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.60180.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00579DAPTransfer from AT5G62470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0016702e-47KM001670.1 Pyrus x bretschneideri transcription factor MYB31 (MYB31) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440595.10.0myb-related protein 306
SwissprotP813922e-69MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A067EX830.0A0A067EX83_CITSI; Uncharacterized protein
TrEMBLV4VM090.0V4VM09_9ROSI; Uncharacterized protein
STRINGXP_006440595.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.12e-48myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]