PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020130m
Common NameCICLE_v10020130mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 449aa    MW: 49689.6 Da    PI: 7.2584
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020130mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-172670147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE+++++da k++G g W+ I +++g ++t+ q++s+ qk+
  Ciclev10020130m 26 REKWTEEEHQRFLDALKMYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 70
                     789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.17E-162074IPR009057Homeodomain-like
PROSITE profilePS5129421.4032175IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-92374IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-162473IPR006447Myb domain, plants
SMARTSM007171.0E-122573IPR001005SANT/Myb domain
PfamPF002498.0E-152669IPR001005SANT/Myb domain
CDDcd001671.12E-102871No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSNSLYSFEN DSLPKVRKPY TITKQREKWT EEEHQRFLDA LKMYGRGWRQ IEEHVGTKTA  60
VQIRSHAQKF FSKVVRESNG SSESSIMPIE IPPPRPKRKP VHPYPRKSVD SLKATSVSNQ  120
QENFTSSNAL VSDKDRQSPT SVLSSFNSDT LGCAASDQQN GCSSPTSCTT EMHSVNLLPI  180
EKENEYVTSI SFPKEEKIST LPAHLSASSN VEELASVSKD SVYPKGDAAA APSCTSIKLF  240
GRTVLVSDSW KPYSLGADSY KSPISKSSQE NLDVDKENFV QSAPSKHLDT HLLLGMVSSN  300
CNPSSHIGPV FQNMELQKKR TNVAEASHNI YLLWDSLYRG APYFHLMPIG ENQAATPLEF  360
SVKDKEILNE RSCSGSSAGS VSELENWEKS SDVAVDSQCP QVCPLSQASP SNCMRGFVPY  420
KRCLAESEIR SSVIVSEERE RQRARVCS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006441350.10.0protein REVEILLE 7 isoform X1
TrEMBLV4TXF80.0V4TXF8_9ROSI; Uncharacterized protein
STRINGXP_006441350.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.15e-48MYB_related family protein