PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016276m
Common NameCICLE_v10016276mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 267aa    MW: 28817.6 Da    PI: 10.2967
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016276mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.4e-2161110255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  Ciclev10016276m  61 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 110
                      6********.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.99E-1961118No hitNo description
Gene3DG3DSA:3.30.730.104.6E-3361118IPR001471AP2/ERF domain
PROSITE profilePS5103224.35561118IPR001471AP2/ERF domain
SMARTSM003804.9E-4061124IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2361119IPR016177DNA-binding domain
PfamPF008471.9E-1461110IPR001471AP2/ERF domain
PRINTSPR003671.8E-116273IPR001471AP2/ERF domain
PRINTSPR003671.8E-1184100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MPARMKEYLK PAACLDNPAC HHTLSKGKTE RKKKTMAPKE RTISGNRKNI DNRSNNKKEV  60
HYRGVRKRPW GRYAAEIRDP GKKSRVWLGT FDTAEEAARA YDAAAREFRG SKAKTNFPLP  120
SEIVAINKNS NNQQSPSQSS TVESSSSPPP MEPNVEREVT RHVGCFGSGN GLVGRFPFVY  180
QQPGVVALGG GCVTGAAPPV LFLNGFGGSN LMGSVYPVRF DSAGIGFNGA VRNETETESS  240
SVAAVDCKPR RVLNLDLNLA PPVVDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2261119261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2261119564ATERF1
3gcc_A2e-2261119564ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024047707.11e-169ethylene-responsive transcription factor 9
RefseqXP_024951173.11e-169ethylene-responsive transcription factor 9
TrEMBLV4U3I70.0V4U3I7_9ROSI; Uncharacterized protein
STRINGXP_006447242.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-38erf domain protein 9