PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10009700m | ||||||||
Common Name | CICLE_v10009700mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 173aa MW: 19577.6 Da PI: 4.6654 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.1 | 4.7e-14 | 15 | 56 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++E++l+++ k+lG++ W++Ia +++ gRt++++k++w+++l Ciclev10009700m 15 SQQEEDLIIRMPKRLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 56 799***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.355 | 6 | 60 | IPR017930 | Myb domain |
SMART | SM00717 | 5.9E-11 | 10 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.35E-12 | 15 | 63 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-19 | 15 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-12 | 15 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.14E-11 | 15 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MEELPETKHQ ARCISQQEED LIIRMPKRLG NRWSLIAGRL PGRTDNEVKN YWNTHLNKKC 60 RFGKRKATAV DMGTHNINGG DCRENNDDGG SNSKLPAPPM CRNSLNASQG FEEERNDYDA 120 NTWTEGDCGG SFNNYLECAL IPPNNSTFVF DDEPFIAYLD SFLVFETFEC NQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006475895.1 | 1e-114 | transcription factor MYB82 | ||||
TrEMBL | V4UNV4 | 1e-126 | V4UNV4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006450871.1 | 1e-127 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 1e-23 | myb domain protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10009700m |
Entrez Gene | 18054870 |