PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008192m
Common NameCICLE_v10008192mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 470aa    MW: 49141.3 Da    PI: 6.2297
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008192mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.6e-12262307555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Ciclev10008192m 262 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 307
                      99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.50E-13255311No hitNo description
SuperFamilySSF474595.76E-17255317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16259316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9262307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MQPCSSSGEM QGISSLLSNG SHEQQSQIHQ SATFDPTSQD DFLEQMLSSL PSCSWTDLKS  60
PWGVVDLNPN NNNNNINNKQ PRDLSDETAP STTQENNVPA GFQFDESMIL ASKMRQHQIS  120
GNTGSGNNNS AAAKFMMQQQ QQIMMAAARG GIGLPLSLGN GGDNDIVDVS SFKSQQGGDG  180
SVQALYNGFT GSLHGSTQPQ HFHHLQGGSM PGQTFGAPGP VMNQTQAQAS GSTGGGGGGG  240
NTPAQQPKQR VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT DKASMLDEII  300
DYVKFLQLQV KVLSMSRLGG AAAVAPLVAD MSSEGGGGGD CIQANGRNPN GAQTTSANDS  360
LTVTEHQVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS TATCHSRNPI ISTSNNNNNN  420
GNPHHNPLLQ SNGEGPTSPS MSVLTVQSAT MGNGGADGSV KDAASVSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266271RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.11840.0abscission zone| leaf| vegetative tissue
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453668.10.0transcription factor bHLH66
SwissprotQ9ZUG92e-88BH066_ARATH; Transcription factor bHLH66
TrEMBLV4U2420.0V4U242_9ROSI; Uncharacterized protein
STRINGXP_006453668.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-69LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]