PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_40006
Common NameKK1_043067
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 458aa    MW: 48431.5 Da    PI: 6.4563
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_40006genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-12242287555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  C.cajan_40006 242 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 287
                    99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.32E-13235291No hitNo description
SuperFamilySSF474595.63E-17235297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16239296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9242287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MQPCSREMQG LNSLLNSSQI SLQDLHNHNA INQIQNSHMN QHQQQLTPHF DPTSHDDFLD  60
QMLSSCSWPD LAPNKPLWDP NPPTSDETTP SNNDNVAFPY DEHSSLASKF RNHQISTKNN  120
AALILHQQLL MSRAPDSGLL NLPLNLPGND VVDASNFKSP NPGGEASVQA LYNGFTGSLH  180
GAGQASNQTQ HFQHLQGSSN PVHGQNFGGT ANQAPASGAT GGTPAQPRQR VRARRGQATD  240
PHSIAERLRR ERIAERMKAL QELVPNANKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG  300
AAAVAPLVAD MSSEGGGDCI QANGNSNGGG ALAQNSNNNN QTTASTSNDT LTMTEHQVAK  360
LMEEDMGSAM QYLQGKGLCL MPISLATAIS TATCHSRNPL ITAASAGNQI PTNAAHANPA  420
AASNGEGPSS PSMSVLTVQS AVVGNDGAVK DAASVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_40006
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-135AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029125630.10.0transcription factor bHLH66
SwissprotQ9ZUG93e-96BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A151QZU20.0A0A151QZU2_CAJCA; Transcription factor bHLH66
STRINGXP_007138416.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.15e-58LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]