PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_13804 | ||||||||
Common Name | KK1_014227 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ERF | ||||||||
Protein Properties | Length: 186aa MW: 20861.4 Da PI: 10.3673 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68.4 | 1.3e-21 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp +k++r++lg+f+taeeAa+a++aa+++++g C.cajan_13804 23 HYRGVRKRP-WGRYAAEIRDP---NKKTRVWLGTFDTAEEAARAYDAAARQFRG 72 69*******.**********9...347************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.8E-34 | 23 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.10E-20 | 23 | 80 | No hit | No description |
Pfam | PF00847 | 1.7E-15 | 23 | 72 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.381 | 23 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-40 | 23 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-23 | 23 | 81 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.8E-12 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-12 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MVKDPNANAK AKTKKPHNGH DLHYRGVRKR PWGRYAAEIR DPNKKTRVWL GTFDTAEEAA 60 RAYDAAARQF RGPKAKTNFP NTTATNENTT NNNSPSQSST VESSTPEREP TRRPNNRFPF 120 LHQLLVSPVS PMGPVQPVFF LDRPGLFPVR FEPVPVQSDS DSSSVVDCQP KRELNLDLNL 180 APPMDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-22 | 24 | 81 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_13804 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020224324.1 | 1e-135 | ethylene-responsive transcription factor 9 | ||||
Swissprot | Q9FE67 | 1e-48 | ERF80_ARATH; Ethylene-responsive transcription factor 9 | ||||
TrEMBL | A0A151SVH9 | 1e-134 | A0A151SVH9_CAJCA; Ethylene-responsive transcription factor 9 | ||||
STRING | GLYMA12G13315.1 | 6e-58 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-21 | erf domain protein 9 |
Publications ? help Back to Top | |||
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