PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g036800.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 453aa    MW: 50644.7 Da    PI: 5.7174
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g036800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.84.1e-14117139426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e C+f++rtG CkyG++CkF+H+
  Csa18g036800.1 117 EDCSFYMRTGSCKYGSSCKFNHP 139
                     89********************9 PP
2zf-CCCH31.92.3e-10165186526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++++rtG CkyG++C+F+H 
  Csa18g036800.1 165 ECKYYFRTGGCKYGESCRFSHM 186
                     6********************6 PP
3zf-CCCH38.42.1e-12208232226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C+f++r+G Ck+G+ CkF+H+
  Csa18g036800.1 208 GEKECPFYMRNGSCKFGSDCKFNHP 232
                     5789********************9 PP
4zf-CCCH19.81.4e-06353378227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C ++++tG Ck+  +Ck++H++
  Csa18g036800.1 353 DQPECTYYLKTGDCKFKYKCKYHHPK 378
                     689*********************96 PP
5zf-CCCH32.91.1e-10399423226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++r+G+Ck+G+ C+F H+
  Csa18g036800.1 399 DQSMCTHYSRYGICKFGPACRFDHS 423
                     5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.23E-6111141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159113141IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6113140IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-11117139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-6119138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.957160188IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4160187IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6161189IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-8165186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-7166188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.929206234IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6206233IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10208232IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6208233IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4212231IPR000571Zinc finger, CCCH-type
SMARTSM003560.079351378IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112351379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-5355381IPR000571Zinc finger, CCCH-type
PfamPF146080.46357377No hitNo description
PROSITE profilePS5010314.906397425IPR000571Zinc finger, CCCH-type
SMARTSM003560.019397424IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6398425IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-5401423IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-7403423IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSKPEEISDP NPTGPDPKQP SRSSSDEVTV TVADRDRSDQ NQVTEELSDQ FRNVGLDDDS  60
ANERSVPISG YEEGNVETES RALGSDQKEE EEEEVRSERE SNVEKRMIVY PVRPDAEDCS  120
FYMRTGSCKY GSSCKFNHPV RRRLQIGREK VREREEDVDS LKLMECKYYF RTGGCKYGES  180
CRFSHMKEQT SLASRPELNF LGLPIRSGEK ECPFYMRNGS CKFGSDCKFN HPDPTAIGGV  240
DSPMFRGNNG GSVGSFSPKA PLPQVSSTSW SSSRHMNGTG TAPFIPAMFP QNRGVSSPQA  300
SEWNGYQASS PYPPERSVLP PSTYSMNNSI AETGSFSQYQ QQNSVEEFPE RPDQPECTYY  360
LKTGDCKFKY KCKYHHPKNR LPKQAPSSFN DKGLPLRPDQ SMCTHYSRYG ICKFGPACRF  420
DHSIPPTFSS SSSLTVEGPQ AGANGNEDDS WH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g036800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287900.0AK228790.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-10-O16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484051.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like
SwissprotQ5RJC50.0C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLR0F1G10.0R0F1G1_9BRAS; Uncharacterized protein
STRINGXP_010484051.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.10.0C3H family protein