PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g045900.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 355aa    MW: 37181.5 Da    PI: 6.9671
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g045900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-11151196555
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  Csa16g045900.1 151 HSIAERLRRERIAERMKALQELVPNgN------KIDKASMLDEIIDYVKFLQ 196
                     99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-17144205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-13144200No hitNo description
PROSITE profilePS5088817.13146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-16148205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-9151196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-13152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MMNSSLLTPS SSSSSHIQTP ATTTFDHEDF LDQIFSSAPW PSVVDDAHPP LPSDSFHGHD  60
VDSRNQQIMM MPLNDGSSVH ALYNGFSASG SLPNFHIPQG SGGGLMNQER QTQTPSQPQA  120
RASTATGGTV AAPPQSRTKV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNGNKID  180
KASMLDEIID YVKFLQLQVK VLSMSRLGGA ASVSSQISEA GGSHGNATSA MASGSQTAGS  240
SNDNITMTEH QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATCHT TRNPLIPGAA  300
DVGGPSSPNL SNMTIQSTNT TMGHGNGKLK GNGNGIIEGS SSISVKEAVS VSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g045900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1763700.0AK176370.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-07-J21.
GenBankBT0265120.0BT026512.1 Arabidopsis thaliana At2g24260 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472429.10.0PREDICTED: transcription factor bHLH66
SwissprotQ9ZUG90.0BH066_ARATH; Transcription factor bHLH66
TrEMBLR0HCZ60.0R0HCZ6_9BRAS; Uncharacterized protein
STRINGXP_010472429.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.10.0LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]