PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g027570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 332aa    MW: 38279.1 Da    PI: 6.1881
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g027570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.8e-1465112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd +l + +   G  +W+++++  g+ R++k+c++rw +yl
   Csa16g027570.1  65 KGPWTAEEDRKLMNFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 112
                      79******************************99************97 PP
2Myb_DNA-binding45.22.1e-14125162847
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      E++  +d + qlG++ W++Ia++++ gRt++++k++w+++
   Csa16g027570.1 125 EEKMVIDRHSQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 162
                      99999**********.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-2056113IPR009057Homeodomain-like
PROSITE profilePS5129413.85360112IPR017930Myb domain
SuperFamilySSF466891.2E-2562159IPR009057Homeodomain-like
SMARTSM007172.3E-1164114IPR001005SANT/Myb domain
PfamPF002491.9E-1365112IPR001005SANT/Myb domain
CDDcd001672.36E-767112No hitNo description
PROSITE profilePS5129423.328113167IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-22114167IPR009057Homeodomain-like
SMARTSM007171.2E-12117165IPR001005SANT/Myb domain
PfamPF002495.8E-12124162IPR001005SANT/Myb domain
CDDcd001673.53E-9125163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
QLSLQLAITL TLAGQRQEID KERKIKQSIN SVLFINLKSR RNSIQSEGER EMERQPCCNK  60
VGLKKGPWTA EEDRKLMNFI LTNGQCCWRA VPKLAGLLRC GKSCRLRWTN YLRPDHKRGL  120
LSDYEEKMVI DRHSQLGNRW SKIASHLPGR TDNEIKNHWN THIKKKLRKM GIDPLTHKPL  180
SIVEQEDEKP VKKLQKVQMP LQEPAEKNLE EPNSYCLTKE SNNTKNTSRL EESLDHDQFN  240
AMNLEYGVED VPLVDPESLE LICSSSTMSS STSTPSNSSN DSSFLKDLQF PDFEWSDYGN  300
SNNNDYNDGV DNIIENNMMS LWDVDDFSSW DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26631675108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g027570.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0628691e-162AF062869.1 Arabidopsis thaliana putative transcription factor (MYB20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474190.10.0PREDICTED: protein ODORANT1-like, partial
SwissprotQ9C7U71e-142MYB20_ARATH; Transcription factor MYB20
TrEMBLD7KTM01e-164D7KTM0_ARALL; Uncharacterized protein
STRINGXP_010474190.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.11e-138myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]