PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g023880.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 433aa    MW: 48684.5 Da    PI: 4.3731
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g023880.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-1674121148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd ll ++++++G g W+ ++ + g++R++k+c++rw++yl
   Csa16g023880.1  74 KGAWTAEEDSLLRQCIEKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYL 121
                      79********************************************97 PP
2Myb_DNA-binding46.11.1e-14127172148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +gr   +E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++l
   Csa16g023880.1 127 KGRLNSDEVDLLIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 172
                      5777889***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.61558IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-7639IPR009057Homeodomain-like
SuperFamilySSF466894.97E-5738IPR009057Homeodomain-like
SMARTSM0071711950IPR001005SANT/Myb domain
PROSITE profilePS5129425.2869125IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2169123IPR009057Homeodomain-like
SuperFamilySSF466891.01E-2772168IPR009057Homeodomain-like
SMARTSM007173.3E-1573123IPR001005SANT/Myb domain
PfamPF002491.1E-1574121IPR001005SANT/Myb domain
CDDcd001674.75E-1176121No hitNo description
Gene3DG3DSA:1.10.10.601.0E-21124175IPR009057Homeodomain-like
SMARTSM007173.4E-14126174IPR001005SANT/Myb domain
PROSITE profilePS5129419.377126176IPR017930Myb domain
PfamPF002497.7E-13129172IPR001005SANT/Myb domain
CDDcd001672.89E-10133172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MEGSSSGLKK GTWTAKEDSL LKQCIDRYRE GKWHQVPLRA GICYIDVKYL VTYIIVSLQL  60
TNRSMEGSSK GLTKGAWTAE EDSLLRQCIE KYGEGKWHQV PLRAGLNRCR KSCRLRWLNY  120
LKPSIKKGRL NSDEVDLLIR LHKLLGNRWS LIAGRLPGRT ANDVKNYWNT HLSKKYEPGC  180
KTKMKKKNII SPPTTTTTVQ KVNVFKPRPR SFTVNKDCSH LNGLPEVDIT PSSNGLIINN  240
VSDDSITFDK DDEKDDFLNI LINEDDMWLE NLLDDSQEAD AVVPEATTNE QGATLAFDVE  300
QLSSIIQEAD AVVPEATTNE QGATLAFDVE QLWSLFDGET FTIEVDIIPS SNGISINNVC  360
DESITFDKDD EKDDFLNILI NEDDMWLENL LDDSQETDAG VPEATTNEQG ATLAFDVEQF  420
WSLFDGETVE LD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-21721752104C-Myb DNA-Binding Domain
1msf_C2e-21721752104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g023880.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0629150.0AF062915.2 Arabidopsis thaliana putative transcription factor (MYB90) mRNA, MYB90-Col allele, complete cds.
GenBankAF3251240.0AF325124.1 Arabidopsis thaliana production of anthocyanin pigment 2 protein (PAP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511463.11e-166PREDICTED: transcription factor MYB114-like
SwissprotQ9ZTC31e-126MYB90_ARATH; Transcription factor MYB90
TrEMBLD7KTP51e-134D7KTP5_ARALL; MYB transcription factor
STRINGXP_010511463.11e-165(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66390.11e-128myb domain protein 90
Publications ? help Back to Top
  1. Ilk N,Ding J,Ihnatowicz A,Koornneef M,Reymond M
    Natural variation for anthocyanin accumulation under high-light and low-temperature stress is attributable to the ENHANCER OF AG-4 2 (HUA2) locus in combination with PRODUCTION OF ANTHOCYANIN PIGMENT1 (PAP1) and PAP2.
    New Phytol., 2015. 206(1): p. 422-35
    [PMID:25425527]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Nemie-Feyissa D,Heidari B,Blaise M,Lillo C
    Analysis of interactions between heterologously produced bHLH and MYB proteins that regulate anthocyanin biosynthesis: quantitative interaction kinetics by Microscale Thermophoresis.
    Phytochemistry, 2015. 111: p. 21-6
    [PMID:25659750]
  4. Bac-Molenaar JA,Fradin EF,Rienstra JA,Vreugdenhil D,Keurentjes JJ
    GWA Mapping of Anthocyanin Accumulation Reveals Balancing Selection of MYB90 in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(11): p. e0143212
    [PMID:26588092]
  5. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  6. Li N, et al.
    The heterologous expression of Arabidopsis PAP2 induces anthocyanin accumulation and inhibits plant growth in tomato.
    Funct. Integr. Genomics, 2018. 18(3): p. 341-353
    [PMID:29372433]