PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa15g044200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 319aa MW: 35923.3 Da PI: 6.189 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.2 | 2.5e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+ + + G +W++ ++ g+ R++k+c++rw +yl Csa15g044200.1 14 RGPWTPEEDQILISFIIKRGHSNWRALPKQAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 103 | 148 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++ +++ lG++ W++Ia++++ gRt++++k+ w+++l Csa15g044200.1 103 RGNFTKEEEDAIISLHQILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 148 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.223 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.04E-21 | 15 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.48E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 5.622 | 62 | 93 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-8 | 65 | 87 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.38 | 66 | 99 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.98E-21 | 87 | 154 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-10 | 88 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.064 | 98 | 152 | IPR017930 | Myb domain |
SMART | SM00717 | 7.3E-15 | 102 | 150 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-15 | 103 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.31E-10 | 105 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-23 | 110 | 149 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 319 aa Download sequence Send to blast |
MGRAPCCEKM GLKRGPWTPE EDQILISFII KRGHSNWRAL PKQAGLLRCG KSCRLRWMNY 60 LKPDIKRGNF TKEEEDAIIS LHQILGNSCR LRWMNYLKPD IKRGNFTKEE EDAIISLHQI 120 LGNRWSAIAA KLPGRTDNEI KNVWHTHLKK RLEDYQPAKP KTTGNKKKVT KPKSESVISN 180 SNSTRSESEL GNSSNPSGES LFSASPSTSE VSSMTLMSHE GHSNETKMDH QKAGDIISTI 240 DQDCVSFENF GADIDESFWN ETLYSQDDLE VAGLDETTHQ QFQHLGSVDD GMIFDSEMDF 300 WFDVLARTGG EQDLLAGL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 7e-26 | 10 | 152 | 1 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-26 | 10 | 152 | 1 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa15g044200.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK176617 | 1e-177 | AK176617.1 Arabidopsis thaliana mRNA for putative myb-related transcription factor, complete cds, clone: RAFL25-14-I20. | |||
GenBank | AK176693 | 1e-177 | AK176693.1 Arabidopsis thaliana mRNA for putative myb-related transcription factor, complete cds, clone: RAFL25-23-N24. | |||
GenBank | AY550296 | 1e-177 | AY550296.1 Arabidopsis thaliana MYB transcription factor (At3g23250) mRNA, complete cds. | |||
GenBank | BT026046 | 1e-177 | BT026046.1 Arabidopsis thaliana At3g23250 mRNA, complete cds. | |||
GenBank | Y14207 | 1e-177 | Y14207.1 A.thaliana mRNA for AtMYB15 R2R3-MYB transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010466641.1 | 0.0 | PREDICTED: myb-related protein Myb4-like isoform X1 | ||||
Refseq | XP_010466642.1 | 0.0 | PREDICTED: myb-related protein Myb4-like isoform X2 | ||||
Swissprot | Q9LTC4 | 1e-171 | MYB15_ARATH; Transcription factor MYB15 | ||||
TrEMBL | D7L396 | 1e-172 | D7L396_ARALL; AtMYB15/AtY19/MYB15 | ||||
STRING | XP_010466642.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23250.1 | 1e-173 | myb domain protein 15 |