PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15491s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 60aa MW: 6886.83 Da PI: 10.969 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l Csa15491s010.1 2 SPQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 43 89****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 3.58E-12 | 1 | 43 | No hit | No description |
PROSITE profile | PS51294 | 23.345 | 1 | 47 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-10 | 1 | 45 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.82E-14 | 2 | 50 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.0E-22 | 2 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.0E-15 | 2 | 43 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 60 aa Download sequence Send to blast |
MSPQEQDLII RMHKLLGNRW SLIAGRLPGR TDNEVKNYWN THLNKKSSSR KQNAPESIGA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15491s010.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519637 | 1e-59 | AY519637.1 Arabidopsis thaliana MYB transcription factor (At5g52600) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010442796.1 | 3e-36 | PREDICTED: transcription factor MYB82-like | ||||
Refseq | XP_010445061.1 | 2e-36 | PREDICTED: transcription factor MYB82-like | ||||
Refseq | XP_010482628.1 | 3e-36 | PREDICTED: transcription factor MYB82 isoform X1 | ||||
Swissprot | Q9LTF7 | 4e-34 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | D7MS68 | 6e-35 | D7MS68_ARALL; Predicted protein | ||||
STRING | XP_010442796.1 | 1e-35 | (Camelina sativa) | ||||
STRING | XP_010445061.1 | 8e-36 | (Camelina sativa) | ||||
STRING | XP_010482628.1 | 1e-35 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 2e-36 | myb domain protein 82 |