PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g069680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 29866.8 Da PI: 9.2627 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9.1e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed+ l d+++ +G g W+t +++ g++R++k+c++rw +yl Csa12g069680.1 16 RGAWTDHEDKTLRDYITTHGEGKWSTLPNKAGLKRCGKSCRLRWKNYL 63 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.7e-17 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+++++++lG++ W++Ia +++ gRt++++k++w++ Csa12g069680.1 69 RGNISPDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNHWNSN 113 7899******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.725 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.5E-28 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-13 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-22 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.53E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.416 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-24 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.80E-11 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0090379 | Biological Process | secondary cell wall biogenesis involved in seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGKRATNALK REELNRGAWT DHEDKTLRDY ITTHGEGKWS TLPNKAGLKR CGKSCRLRWK 60 NYLRPGIKRG NISPDEEELI IRLHNLLGNR WSLIAGRLPG RTDNEIKNHW NSNLRKRLPK 120 TQTNPPKRIK HSTKNENNVR VIRTKAMRCS KALLLSDLSL QKQSSISPLP LKEQEMMDQG 180 GTSSSLMGDL QFDFDRIQSE FLFPDLIDFD SLDCGNVTSF VSSEEILGDL VPAQGNLDLN 240 RPFTSYHHHG DDEDWLGNFN C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 13 | 118 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g069680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF371981 | 0.0 | AF371981.2 Arabidopsis thaliana putative transcription factor MYB123 (MYB123) mRNA, complete cds. | |||
GenBank | AY519630 | 0.0 | AY519630.1 Arabidopsis thaliana MYB transcription factor (At5g35550) mRNA, complete cds. | |||
GenBank | DQ447000 | 0.0 | DQ447000.1 Arabidopsis thaliana clone pENTR221-At5g35550 myb family transcription factor (At5g35550) mRNA, complete cds. | |||
GenBank | DQ653318 | 0.0 | DQ653318.1 Arabidopsis thaliana clone 0000017211_0000012024 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010450385.1 | 0.0 | PREDICTED: transcription factor TT2 | ||||
Swissprot | Q9FJA2 | 1e-166 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A178UCY6 | 1e-164 | A0A178UCY6_ARATH; TT2 | ||||
STRING | XP_010450385.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-157 | MYB family protein |