PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g083930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 270aa    MW: 31321.1 Da    PI: 8.4256
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g083930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding444.9e-141562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l++ +  +G  +W+t++   g+ R +k+c++rw +yl
   Csa11g083930.1 15 KGLWSPEEDQKLKNFIISHGHACWTTVPILAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding55.71.1e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE+e+++ ++  lG++ W++Ia++++ gRt++++k++w++yl
   Csa11g083930.1  68 RGTFSAEEEEIILTLHSSLGNK-WSRIAKYLP-GRTDNEIKNYWHSYL 113
                      899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9741062IPR017930Myb domain
SuperFamilySSF466898.24E-2812109IPR009057Homeodomain-like
SMARTSM007171.1E-91464IPR001005SANT/Myb domain
PfamPF002495.1E-121562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-201669IPR009057Homeodomain-like
CDDcd001678.74E-81862No hitNo description
PROSITE profilePS5129425.94963117IPR017930Myb domain
SMARTSM007177.4E-1767115IPR001005SANT/Myb domain
PfamPF002493.3E-1668113IPR001005SANT/Myb domain
CDDcd001672.06E-1170113No hitNo description
Gene3DG3DSA:1.10.10.606.5E-2670116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MMTKSGERPK QRQRKGLWSP EEDQKLKNFI ISHGHACWTT VPILAGLQRN GKSCRLRWIN  60
YLRPGLKRGT FSAEEEEIIL TLHSSLGNKW SRIAKYLPGR TDNEIKNYWH SYLKKRWLKS  120
QPQLKTQRSN LTESATSLIS CGKRSLETET LDHVISFEKL AEKPSSSPPQ ESNTNMMNSG  180
KYLPKLFFSE WISSSNPHID YSPALTYSKH INHQTEDQID EEEVMMINNN NYSSLEDVML  240
RTEFLQPDHE YANYYSSGDF FSNNDQNYV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25151167107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g083930.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196360.0AY519636.1 Arabidopsis thaliana MYB transcription factor (At5g52260) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442747.10.0PREDICTED: transcription factor LAF1-like
SwissprotQ9M0K42e-96LAF1_ARATH; Transcription factor LAF1
TrEMBLD7MRP61e-161D7MRP6_ARALL; Uncharacterized protein
TrEMBLQ9LTJ51e-161Q9LTJ5_ARATH; MYB transcription factor
STRINGXP_010442747.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-166myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]