PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g057510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 212aa    MW: 23932.7 Da    PI: 6.9608
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g057510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-172067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
   Csa11g057510.1 20 KGPWTMEEDLILINCIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 67
                     79********************************************97 PP
2Myb_DNA-binding513.4e-1673116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++ + +++ ++G++ W++Ia++++ gRt++++k++w++
   Csa11g057510.1  73 RGNITAEEQLTIMELHSKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 116
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-221570IPR009057Homeodomain-like
PROSITE profilePS5129416.2051567IPR017930Myb domain
SuperFamilySSF466898.99E-3017114IPR009057Homeodomain-like
SMARTSM007178.1E-131969IPR001005SANT/Myb domain
PfamPF002492.2E-162067IPR001005SANT/Myb domain
CDDcd001674.38E-102267No hitNo description
PROSITE profilePS5129423.34468122IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2371121IPR009057Homeodomain-like
SMARTSM007175.4E-1472120IPR001005SANT/Myb domain
PfamPF002497.3E-1573116IPR001005SANT/Myb domain
CDDcd001677.55E-1177116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEKRVGGTGG SGSGDADVRK GPWTMEEDLI LINCIANHGE GVWNSLAKSA GLKRTGKSCR  60
LRWLNYLRPD VRRGNITAEE QLTIMELHSK WGNRWSKIAK HLPGRTDNEI KNFWRTKIQK  120
YIIKNGETTT AGSQSSEIIN HHATSTGQVL NDTQEPMDMY SQHANNIDHQ LSYNTYVPES  180
DSTMIPLSVD QSEQNYWSVD DLWPMHLYNG N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26141221108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB21 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:16972096, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g057510.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1759870.0AF175987.1 Arabidopsis thaliana putative transcription factor (MYB24) mRNA, complete cds.
GenBankAY5196320.0AY519632.1 Arabidopsis thaliana MYB transcription factor (At5g40350) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010441167.11e-158PREDICTED: transcription factor MYB24-like
SwissprotQ9SPG91e-126MYB24_ARATH; Transcription factor MYB24
TrEMBLR0H5581e-125R0H558_9BRAS; Uncharacterized protein
STRINGXP_010441167.11e-157(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.11e-128myb domain protein 24
Publications ? help Back to Top
  1. Liu Z, et al.
    A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation.
    Mol Plant, 2015. 8(12): p. 1751-65
    [PMID:26388305]
  2. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  3. Huang H, et al.
    Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development.
    Front Plant Sci, 2017. 8: p. 1525
    [PMID:28928760]