PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g008900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 179aa MW: 20413 Da PI: 6.6712 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.7 | 7.2e-10 | 49 | 71 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W++Ia++++ gRt++++k++w++ Csa06g008900.1 49 RWSKIAKHLP-GRTDNEIKNFWRT 71 5*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-12 | 41 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.77E-8 | 47 | 71 | No hit | No description |
SuperFamily | SSF46689 | 1.64E-8 | 47 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-7 | 49 | 71 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.516 | 49 | 73 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MFWLHLDVLT LVLCIHILKS LLPHTNHYRV IIIVNNDATN QLVLKCMIRW SKIAKHLPGR 60 TDNEIKNFWR TRIQKYIKQA DATTTSSVGS HHSSEINDQA ASTSSHNVFC TQDQPMETYS 120 PTPTSYQHTN MEFNYGNYST AATATVDYPI PMTVDDQSGE NYWGMDDIWS SMHLLNGY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL. Acts redundantly with MYB24 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB24 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:11967090, ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g008900.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002686 | 1e-172 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010514490.1 | 1e-93 | PREDICTED: transcription factor MYB21-like | ||||
Swissprot | Q9LK95 | 4e-88 | MYB21_ARATH; Transcription factor MYB21 | ||||
TrEMBL | D7LPK4 | 2e-86 | D7LPK4_ARALL; ATMYB21 | ||||
STRING | XP_010514490.1 | 4e-93 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 2e-80 | myb domain protein 21 |
Publications ? help Back to Top | |||
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