PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g001980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 275aa MW: 31255.6 Da PI: 5.6057 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.4e-18 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv+ v +G +W+ Iar g++Rt+k+c++rw++yl Csa05g001980.1 21 KGPWTEEEDAVLVNFVSIHGDARWNHIARSSGLKRTGKSCRLRWLNYL 68 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.8 | 7e-15 | 74 | 117 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE+ +++++ ++G++ W++Ia++++ gRt++++k++w++ Csa05g001980.1 74 RGNITLEEQFMILKLHSLWGNR-WSKIAQYLP-GRTDNEIKNYWRT 117 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.811 | 16 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-30 | 18 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-15 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-16 | 21 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 22 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.86E-12 | 23 | 68 | No hit | No description |
PROSITE profile | PS51294 | 18.098 | 73 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-13 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-13 | 74 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-22 | 76 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-10 | 78 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MEDYERNSNS PTHDEDSDIR KGPWTEEEDA VLVNFVSIHG DARWNHIARS SGLKRTGKSC 60 RLRWLNYLRP DVRRGNITLE EQFMILKLHS LWGNRWSKIA QYLPGRTDNE IKNYWRTRVQ 120 KQAKHLRCDV NSNLFKETMR NVWMPRLVER INAQSSPATC EKVESTMITD PGQPIDVPSP 180 VEPGYVQFDP NHHNQQLVPA SALSATSSNS PAETLSDVQG GAVNGSGYDP VGQTGFGEFN 240 DWGCVGGDNM WTSEESLWFL QDQFCHETTS YSYN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-26 | 18 | 123 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g001980.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229140 | 0.0 | AK229140.1 Arabidopsis thaliana mRNA for MYB transcription factor, complete cds, clone: RAFL16-42-L19. | |||
GenBank | AY519579 | 0.0 | AY519579.1 Arabidopsis thaliana MYB transcription factor (At2g47190) mRNA, complete cds. | |||
GenBank | BT010949 | 0.0 | BT010949.1 Arabidopsis thaliana At2g47190 gene, complete cds. | |||
GenBank | BT011656 | 0.0 | BT011656.1 Arabidopsis thaliana At2g47190 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010507918.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q10MB4 | 6e-76 | MYB2_ORYSJ; Transcription factor MYB2 | ||||
TrEMBL | A0A178VX63 | 0.0 | A0A178VX63_ARATH; MYB2 | ||||
TrEMBL | Q39028 | 0.0 | Q39028_ARATH; ATMYB2 | ||||
STRING | XP_010507918.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47190.1 | 0.0 | myb domain protein 2 |
Publications ? help Back to Top | |||
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