PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g034120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 28682.4 Da PI: 7.613 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 7.9e-17 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l +v ++G g+W+tI+ + g+ R +k+c++rw +yl Csa04g034120.1 20 KGLWSPEEDEKLRSYVLKYGHGCWSTIPIHTGLQRNGKSCRLRWVNYL 67 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.9 | 3.1e-15 | 74 | 117 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +T+eE+ l+ ++ +lG++ W+ I++ ++ gRt++++k++w++ Csa04g034120.1 74 STFTKEEEITLLSLHSMLGNK-WSQISKFLP-GRTDNEIKNYWHSN 117 689******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-23 | 14 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.649 | 15 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 19 | 69 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.47E-30 | 19 | 114 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.0E-15 | 20 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-10 | 23 | 67 | No hit | No description |
PROSITE profile | PS51294 | 23.985 | 68 | 122 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-24 | 71 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-15 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-14 | 73 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.21E-10 | 75 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MVYKSEKPNR KLKSKEKQRK GLWSPEEDEK LRSYVLKYGH GCWSTIPIHT GLQRNGKSCR 60 LRWVNYLRPG LKKSTFTKEE EITLLSLHSM LGNKWSQISK FLPGRTDNEI KNYWHSNLKK 120 GVTLTQLETS RTHQTPSITN SLTERSSSSI NLGETFNAQT PSFSPSLVFS EWLDHSLFMD 180 QSPQNLDVPQ ERGFIVPCGP LHHLENNSSP DLVPTSDFLL EDEISEVEFC TSFSDNFLFE 240 GLINELRQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-28 | 20 | 122 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g034120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519596 | 1e-152 | AY519596.1 Arabidopsis thaliana MYB transcription factor (At3g48920) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010503538.1 | 0.0 | PREDICTED: transcription factor LAF1-like | ||||
TrEMBL | R0FRN7 | 1e-143 | R0FRN7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010503538.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48920.1 | 1e-143 | myb domain protein 45 |