PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g030530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 332aa    MW: 36738 Da    PI: 7.0029
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g030530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.6e-181158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++ +G+g+W++++ + g++R+ k+c++rw +yl
   Csa04g030530.1 11 KGPWTPEEDIILVSYIQDHGPGNWRSVPTHTGLRRCSKSCRLRWTNYL 58
                     79********************************************97 PP
2Myb_DNA-binding48.32.3e-1564109148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   Csa04g030530.1  64 RGNFTQHEEKMILHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 109
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-24461IPR009057Homeodomain-like
PROSITE profilePS5129426.097662IPR017930Myb domain
SuperFamilySSF466891.72E-308105IPR009057Homeodomain-like
SMARTSM007177.4E-151060IPR001005SANT/Myb domain
PfamPF002492.1E-161158IPR001005SANT/Myb domain
CDDcd001679.06E-121358No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2462114IPR009057Homeodomain-like
SMARTSM007171.1E-1563111IPR001005SANT/Myb domain
PROSITE profilePS5129419.06763113IPR017930Myb domain
PfamPF002498.7E-1464109IPR001005SANT/Myb domain
CDDcd001671.99E-1166109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MALCDKIGVK KGPWTPEEDI ILVSYIQDHG PGNWRSVPTH TGLRRCSKSC RLRWTNYLRP  60
GIKRGNFTQH EEKMILHLQA LLGNRWAAIA SYLPERTDND IKNYWNTHLK KKLKKMNDSC  120
DSTINNGVDS KDFSSPNKNT TSHQSNSSSK GQWERRLQTD INMAKQALCD ALSLDKPQNP  180
TNFSLTDLGY GPSSSSSSTT TTTTTTTRNT NPYPSGVYAS SAENIARLLQ NFMKDTPKTS  240
VPSPVAATGM AITTAASSPS TTEGDGEGVD HSLFSFNSMD EAEEKPKLLD HDINGLITQG  300
SLSLFEKWLF DEQSHDLIIN NMSLEGQEVL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-26111134105MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-261111327128MYB TRANSFORMING PROTEIN
1mse_C2e-26111134105C-Myb DNA-Binding Domain
1msf_C2e-26111134105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g030530.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0629180.0AF062918.1 Arabidopsis thaliana putative transcription factor (MYB94) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503364.10.0PREDICTED: myb-related protein 306-like isoform X2
RefseqXP_019100200.10.0PREDICTED: myb-related protein 306-like isoform X1
SwissprotQ9SN780.0MYB94_ARATH; Transcription factor MYB94
TrEMBLD7LRD60.0D7LRD6_ARALL; Uncharacterized protein
STRINGXP_010503364.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.10.0myb domain protein 94
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  4. Lee SB,Kim HU,Suh MC
    MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis.
    Plant Cell Physiol., 2016. 57(11): p. 2300-2311
    [PMID:27577115]