PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004514818.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | TCP | ||||||||
Protein Properties | Length: 301aa MW: 32705.7 Da PI: 9.1944 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.4 | 7.4e-40 | 49 | 145 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqq++p+i+++tgt++++as+ +++s +++ ss+ XP_004514818.1 49 APKRTSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPASALSSSSVTTQQQ-GSSScslssglq 142 789******************************************************************7773333333333.222223333333 PP TCP 89 ..k 89 + XP_004514818.1 143 lhQ 145 330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.9E-31 | 53 | 194 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.171 | 55 | 109 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MDPKSSKQQS QEPNNNMGEN KPSDSKDFQI VLSETTTKDE TTKKQQQLAP KRTSNKDRHT 60 KVEGRGRRIR MPALCAARIF QLTRELGHKS DGETIQWLLQ QSEPSIIAAT GTGTIPASAL 120 SSSSVTTQQQ GSSSCSLSSG LQLHQKIDEL VGNRITSSNS WGTMVGGNLG RTNMWTPHHH 180 VSGFGFQSSS AHSTTTNDHG SNYLSKIGFS GFDHQNINSN NNNNNGNMVG GMSFTSILGG 240 NHQQIPGLEL GLSQDGQHIG VLNQQALSQI YQQIGQTRVH HQQQQNQNQN SSKDDSQGSG 300 Q |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004514818.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209532 | 2e-99 | AC209532.2 Medicago truncatula chromosome 7 BAC clone mth2-62a7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004514818.1 | 0.0 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 6e-72 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A1S2Z495 | 0.0 | A0A1S2Z495_CICAR; transcription factor TCP20-like | ||||
STRING | XP_004514818.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 2e-62 | TCP family protein |