PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507723.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 400aa    MW: 43033.9 Da    PI: 6.627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507723.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12212257555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  XP_004507723.1 212 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 257
                     99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.79E-13205261No hitNo description
SuperFamilySSF474595.1E-17205266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16209266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9212257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MHPCSREMQS LNSLLNSPPS QIPIPLQNHS QIQINHDTFH QSHNSHDDFL KQILSTLPSS  60
SSWNNLDPTN SNPKPLWDSN SDETPLSDNV HFPNYDEHTN LASKFRNHQI NDKAAALMLL  120
RGADSGLLQM PLNPADFDSS QNDVVDASSV QALYNGFSGS LHGIAQNNTN HHFQGQGFGG  180
SVSATNQAPA SGTPGQPRQK IRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT  240
DKASMLDEII DYVKFLQVQV KVLSMSRLGG AGAVAPLVAD MSSEVVSDCV QANGNPRNST  300
GNPKTANESL TMTEQQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST ATCHNRNPLM  360
INAANNGNSN PVIASNGDGP SSPAMSVNSI VKDAASASKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216221RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507723.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507723.10.0transcription factor bHLH66-like
SwissprotQ9ZUG91e-87BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A1S2YP070.0A0A1S2YP07_CICAR; transcription factor bHLH66-like
STRINGXP_004507723.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-73LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]