PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g33490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25870 Da PI: 6.9262 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.6e-19 | 47 | 97 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +++Wv+eIr+pse +kr++lg++ t+e+Aa+a++ +++l+g+ CA01g33490 47 IYRGVRRRN-NNKWVCEIREPSE---QKRIWLGTYPTPEMAARAHDVVALALRGN 97 69****887.8*********976...5*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.23E-28 | 46 | 106 | No hit | No description |
Pfam | PF00847 | 7.0E-13 | 46 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-21 | 47 | 106 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.0E-27 | 47 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.285 | 47 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-28 | 47 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-7 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-7 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MANLERDHSQ KTSSSSSEKS GGGLLLAANR PKKRAGRKKF KETRHPIYRG VRRRNNNKWV 60 CEIREPSEQK RIWLGTYPTP EMAARAHDVV ALALRGNLAT LNFEDSSWRL SVPVSKDPKE 120 LRQAAIKAAN AFHQDSYKSV GIDYMNQEVN SDDVVGGGAS GGDKYNIQNM DILCCNNWGE 180 NNEMLEIEGL SWQEKMAEGL LFSPTPRLGS CFSWDDVESD VEVSLWSYDI * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00002 | PBM | Transfer from 475045 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016557785.1 | 1e-172 | PREDICTED: dehydration-responsive element-binding protein 1E-like | ||||
TrEMBL | A0A1U8FGE9 | 1e-171 | A0A1U8FGE9_CAPAN; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | A0A2G3APH1 | 1e-171 | A0A2G3APH1_CAPAN; dehydration-responsive element-binding protein 1E-like | ||||
STRING | Solyc08g007820.1.1 | 1e-108 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 4e-53 | C-repeat-binding factor 4 |