PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g34300
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 349aa    MW: 38786.4 Da    PI: 6.6259
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g34300genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.6e-17242276135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  CA00g34300 242 CLHCATNKTPQWRTGPMGPKTLCNACGVRYKSGRL 276
                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.6E-741331IPR016679Transcription factor, GATA, plant
Gene3DG3DSA:3.30.50.107.0E-15235273IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.901236272IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-16236286IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-15238300No hitNo description
CDDcd002022.07E-14241288No hitNo description
PfamPF003204.5E-15242276IPR000679Zinc finger, GATA-type
PROSITE patternPS003440242267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDVEKPEFFD AKNGDHFVED FLDLPNDDGM VTDGTLDATV TGNSTDCSVL DNSCNSSMSG  60
SHHGPLLGDN IGYRNFSEGH FSNEFPVPYE DLVELEWLSS FVEESFSSND TQKTQMMQAM  120
KSRTDSEIHQ FIPDPNLSFA ASSAQTFKPE MPVPAKARSK RSRMAPGNWA SRLLVVSPNT  180
ITPESLMDPT SMQDMSSSSE FGMMIPSSGK KTVKSSTPKK KDSTTSHHGP SNMASNTEGR  240
KCLHCATNKT PQWRTGPMGP KTLCNACGVR YKSGRLVPEY RPAASPTFVL TKHSNSHRKV  300
LEIRRQKEVI TRAEHQHQFL PQNMMFDVSN TDDYLIHQHI GPDFRQLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552536.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697818e-80GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A1U8F1L20.0A0A1U8F1L2_CAPAN; GATA transcription factor
STRINGSolyc08g066510.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-78GATA transcription factor 9
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]